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allenai / scispacy

A full spaCy pipeline and models for scientific/biomedical documents.
https://allenai.github.io/scispacy/
Apache License 2.0
1.72k stars 229 forks source link

Update spacy dependency version #411

Closed MichalMalyska closed 2 years ago

MichalMalyska commented 2 years ago

If we can get this done + release then scispacy=0.5.0 would be compatible with medspacy which it currently is not. Passes all tests so there shouldn't be any issues

dakinggg commented 2 years ago

I'm not at the Allen institute anymore, so this might move pretty slowly. But the other thing that would need to be done is check whether the models need to be retrained. I guess to check this you would need to run the model evaluations in project.yml and make sure the metrics are the same for at least the small model or something, on spacy 3.1 and spacy 3.2

dakinggg commented 2 years ago

I should also note that if you urgently need this for your workflow, you can make the change and build scispacy from source

qhreul commented 2 years ago

@dakinggg Does that mean that the SciSpacy is no longer managed under the Allen Institute?

dakinggg commented 2 years ago

It means the package is very lightly maintained right now.

dakinggg commented 2 years ago

Closing because I am retraining the models for spacy 3.2