I got an error - Githubissues

amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

https://www.microsoft.com/en-us/research/project/snap/

Apache License 2.0

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I got an error #108

Closed wangzhenkeep closed 3 years ago

wangzhenkeep commented 7 years ago

The error like this: Welcome to SNAP version 1.0beta.18.

Loading index from directory... 0s. 251041236 bases, seed size 20 Aligning. IntersectingPairedEndAligner::align(): out of secondary result buffer. Read ID M00803:31:000000000-BD8JP:1:1102:7904:25283_1 SNAP exited with exit code 1 from line 780 of file SNAPLib/IntersectingPairedEndAligner.cpp

how to solve it?Thanks!!!

wangzhenkeep commented 7 years ago

I solve it with change "-s 0 500" to "-s 0 1000".And I find the end_2 align at position 603,end_1 align at position 615, read length 152bp.