Closed mr-c closed 3 years ago
Thanks for reporting this. I pushed a fix to the affineGap branch. Could you please try it out and let me know if it works for you ?
--Arun
Dear @arun-sub ; that worked, thanks! I've just upload snap-aligner v1.0.0 to Debian's development distribution with your patch.
I merged the changes to master, so you can pull the latest commit with the fix as well.
I pushed a new binary and updated the web page/readme.
I don’t have a way to make OSX binaries, but we probably only need to update those sometimes. It’s not like too many people are going to run an aligner with a reference that has no duplication at all.
From: Arun Subramaniyan notifications@github.com Sent: Sunday, November 29, 2020 12:16 AM To: amplab/snap snap@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [amplab/snap] segfault: OpenMemoryMappedFile datatest/OverflowTable mmap failed: Invalid argument (#129)
I merged the changes to master, so you can pull the latest commit with the fix as well.
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Thanks all, I think this issue has been resolved!
Hello, while updating the snap-aligner package to version 1.0.0 I've run into a segfault running a test:
Here's the complete build log with Debian package versions and exact compilation flags used: https://gist.github.com/mr-c/c8b4c61d511a80bfcae7bef65fde105e