Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
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Question: Can aligned and unaligned reads be outputted into separate BAMs? #141
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danfulop closed 2 years ago
Can aligned and unaligned reads be outputted into separate BAMs from a single run of SNAP?
From reading the manual it doesn't seem like the
-F
and-E
flags allow this functionality. Am I missing something? Please advice 😅