bolosky
commented
2 years ago You can uncomment the definition of LONG_READS in Read.h and rebuild. You'll want to run it with parameters that let it search farther from the read (i.e,. higher values of -d).
That said, it's not designed or tested for nanopore reads, so you might not get the results you want. I recently tried it on some and it was at least OK at first blush, but that's not the same thing as really testing it.
From: jsonProgram @.> Sent: Tuesday, January 18, 2022 12:45 AM To: amplab/snap @.> Cc: Subscribed @.***> Subject: [amplab/snap] Is SNAP effective for high error rate long read data such as Nanopore or others? (Issue #150)
hi Bolosky, I want to use SNAP to process nanopore data, I don't know if you have tested it?
Best, Json
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jsonProgram
hi Bolosky, I want to use SNAP to process nanopore data, I don't know if you have tested it?
Best, Json