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amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
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Feature request: markduplicate metrics and settings #158

Open matthdsm opened 2 years ago

matthdsm commented 2 years ago

Hi,

Would it be possible to add an output for duplicate metrics like Picard does? Also is there a possibility to add an option to set the distance for optical duplicate marking?

Thanks Matthias