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amplab / snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
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mapping HiC read #165

Open yangfangyuan0102 opened 1 year ago

yangfangyuan0102 commented 1 year ago

Hi, Dear Author, When I map the HiC reads, I use "bwa mem -SP5 $genome $read1 $ read2". I wonder if there is an equivalent option with “-SP5” ?