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amplab
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snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
https://www.microsoft.com/en-us/research/project/snap/
Apache License 2.0
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-F option yielding incongruous output
#119
cxr5298
opened
5 years ago
0
Add missing return statement
#118
liubovch
closed
5 years ago
1
sort option -so expected functionality
#117
ramcn
closed
2 years ago
1
snap speedup above 32 threads
#116
ramcn
closed
3 years ago
2
Error - No overlapping contigs found during variant calling pre processing
#115
ramcn
closed
6 years ago
5
snap showing high io utilization
#114
ramcn
closed
6 years ago
2
Snap aligner FASTQ record larger than buffer
#113
klaas-men
closed
3 years ago
3
Test failure on ppc64 and sparc64
#112
tillea
opened
6 years ago
0
Does not build on 32 bit architectures
#111
tillea
closed
3 years ago
2
Test suite failure on ppc64 and sparc64 architectures
#110
tillea
opened
6 years ago
0
`soft_exit_no_print(1)` returns 1 instead of 0 when calling help
#109
mmterpstra
closed
3 years ago
1
I got an error
#108
wangzhenkeep
closed
3 years ago
1
GRCh38 HLA contig names get turned into invalid @SQ lines
#107
fnothaft
closed
7 years ago
2
Cleaned up methylation
#106
akmorrow13
closed
7 years ago
2
Added Filtering by CNV to ExpressionNearMutations with loose cutoff of 1.0
#105
akmorrow13
closed
7 years ago
1
Added Filtering by CNV to ExpressionNearMutations with loose cutoff of 1.0
#104
akmorrow13
closed
7 years ago
0
Mutation ase distribution
#103
akmorrow13
closed
7 years ago
1
add MannWhitney tests
#102
akmorrow13
closed
7 years ago
2
Public docker image?
#101
sminot
opened
7 years ago
2
Error while creating index
#100
riomario1
closed
3 years ago
3
Expression near mutations fix
#99
akmorrow13
closed
7 years ago
1
fixing off by one bug in BAM reader decodeSeqRC
#98
sbyma
opened
7 years ago
1
Removed unused resources in MethylationAnalysis
#97
akmorrow13
closed
7 years ago
0
AnnotateVariants for Normal and Tumor RNA
#96
akmorrow13
closed
7 years ago
7
Tumor RNA file id fix in generatecases
#95
akmorrow13
closed
7 years ago
1
added Properties file for ExpressionNearMutations
#94
akmorrow13
closed
7 years ago
4
added assembly file for ExpressionByMutationCount
#93
akmorrow13
closed
7 years ago
0
Fixed Makefile for building snapxl-aligner
#92
taltman
opened
7 years ago
1
Added in ExpressionNearMutations and MethylationAnalysis App
#91
akmorrow13
closed
7 years ago
2
'SNAPCommand exit' doesn't when previous job killed.
#90
taltman
opened
7 years ago
0
Typo in Makefile for building snapxl
#89
taltman
opened
7 years ago
0
Error message about long reads needs to be updated
#88
taltman
opened
7 years ago
0
Error- GzipDataReader: inflate failed with -2
#87
MrOlm
closed
3 years ago
5
can you help explain the question about the RAM used by snap
#86
wangzhenkeep
opened
7 years ago
0
what is the command looks like for SNAP paired to use stdin/stdout
#85
wangzhenkeep
closed
7 years ago
2
Documentation out of date
#84
MrOlm
closed
7 years ago
4
Snap takes 3 hours to align two reads
#83
taltman
closed
3 years ago
5
Build requires 188 GB of memory (fortunately not used, just allocated)
#82
tillea
opened
7 years ago
1
Snap usage causes kernel 'soft lockup' bugs on Linux; odd performance profile
#81
taltman
closed
3 years ago
1
SNAP doesn't support full FASTA/IUBMB/IUPAC sequence representation
#80
taltman
closed
3 years ago
2
Odd output when building index from zcat command substitution
#79
taltman
closed
3 years ago
5
Compiling on Ubuntu 16.10 fails
#78
lpryszcz
closed
5 years ago
12
Further development?
#77
sklages
closed
7 years ago
2
SNAP crashes when it tries to generate a BAM file with > 2GB header
#76
bolosky
opened
8 years ago
0
The db is bigger and bigger but the aligenment time is shorter and shorter, why?
#75
wangzhenkeep
closed
7 years ago
6
snap index not creating GenomeIndexHash%d files
#74
ericenns
closed
8 years ago
2
Streaming input causing FASTQ parsing errors due to incorrect line breaks
#73
chapmanb
closed
8 years ago
1
Inconsistent BAM output from identical inputs
#72
blahah
opened
8 years ago
5
Fix compilation errors in C++11.
#71
SolalPirelli
opened
8 years ago
2
Remove dead code
#70
SolalPirelli
closed
7 years ago
3
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