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annahutch / corrcoverage

Repo for corrcoverage package
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credset() interpretation #44

Open eva-sp opened 2 years ago

eva-sp commented 2 years ago

Hello, I have used the credset() function with a threshold=0.99 at a region of 5800 SNPs, the results show that 5200 of these SNPs are included in the credible set. I would not expect such a big number of SNPs in the credible set. Is this normal or am I missing something? Is there any parameter to decrease this number? Best

chr1swallace commented 2 years ago

To answer this we would need to know more about your data. Could you share the Manhattan plot for this region?

https://chr1swallace.github.io

From: eva-sp @.> Sent: Tuesday, May 10, 2022 4:49:05 PM To: annahutch/corrcoverage @.> Cc: Subscribed @.***> Subject: [annahutch/corrcoverage] credset() interpretation (Issue #44)

Hello, I have used the credset() function with a threshold=0.99 at a region of 5800 SNPs, the results show that 5200 of these SNPs are included in the credible set. I would not expect such a big number of SNPs in the credible set. Is this normal or am I missing something? Is there any parameter to decrease this number? Best

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