Your PhD Chapter is Not Found

[YaoxinHuang]

Very impressive work! Provide ur phd work again pls, if possible, since it seems not found on web.

[YaoxinHuang]

Another request, notice that there's a line "import image_3d_visualisation as i3v" in ur "benchmark_segmentation.py" file. But I cannot find the specific module or py-file. Could u pls provide it? It would really helps a lot. Thanks for ur kind!

[YaoxinHuang]

Maybe I found something wrong with ur codes, little mistakes, i suppose. u can check, maybe i'm wrong actually. -segmentation_TDA.py-Line68-"nlabels = np.max(Labels)", it seems to lack "+1". -segmentation_TDA.py-Line99-"filtr[i] = np.sum(cc==1)"，it seems to lack a tap, since the i is the temperature variable of the loop.

[antonfrancois]

Hello,

Thanks for your interest!

About the two first comments: (quick fixes)

• You can find the article explaining all the library here: https://arxiv.org/abs/2401.01160
• the line "import image_3d_visualisation as i3v" should not be here. You can either use
  • Napai viewer: https://napari.org/dev/api/napari.Viewer.html
  • Or you can find the image_2d_visualisation file in another of my repos : https://github.com/antonfrancois/Demeter_metamorphosis/blob/main/demeter/utils/image_3d_visualisation.py. I intend to make it as a separate repo one day, but I did not found the time to do it yet. I will correct this.

For the last issue, I'll have a closer look soon.