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apcamargo
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genomad
geNomad: Identification of mobile genetic elements
https://portal.nersc.gov/genomad/
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plasmid classified as virus?
#108
xinehc
opened
6 days ago
7
genomad annotate fastq file is empty or contains multiple entries
#107
skose82
opened
1 week ago
3
Error mmseqs prefilter
#106
namnh7
closed
1 week ago
4
Error while classifying sequences
#105
LCFortier
opened
1 week ago
6
Small (reference) data for testing
#104
bernt-matthias
closed
1 week ago
9
Different protein number from genomad and pyrodigal-gv
#103
quliping
closed
3 weeks ago
2
mmseqs2 error
#102
manaraleslam2018
closed
3 weeks ago
3
Error with geNomad v1.8.0, missing tensorflow.keras
#101
flefler
closed
1 month ago
5
geNomad taxonomy about Baltimore classification
#100
xjhzjucas
opened
1 month ago
1
The virus identified by genomad weren't annotated as virus sequence by VIBRANT?
#99
Caiyulu-818
opened
1 month ago
3
Errors when download and the same issue when running genomad -h
#98
Tsingsjeen
closed
1 month ago
3
AMR annotations on chromsome?
#97
sophiaaredas
opened
1 month ago
1
Whether measures have been taken by genomad to avoid identifying genomic islands as viruses?
#96
ZongzhiWu
closed
2 months ago
5
[feature request] query database clustering
#95
valentynbez
opened
2 months ago
1
Inquiry on virus from MAG
#94
songmj86
closed
1 month ago
4
Error downloading database
#93
simeonhebrew
opened
2 months ago
2
Circular virus identification
#92
xjhzjucas
closed
2 months ago
5
Recommendations for subsampling BIG input file
#91
wyanren
closed
1 month ago
1
Database download does not work
#90
joao1980
closed
2 months ago
1
License request
#89
Amanda-Biocortex
opened
2 months ago
1
Error with geNomad
#88
xjhzjucas
closed
2 months ago
7
Interpretation of results - plasmids with 0 genes?
#87
jimen210
closed
2 months ago
7
Can we input virus(phage) sequences to identify the plasmid sequence in the virus sequence?
#86
Caiyulu-818
closed
3 months ago
5
Recommendation for taxonomic classification of ssDNA virus
#85
ChenTianYi99
closed
3 months ago
5
Support Keras 3
#84
apcamargo
opened
3 months ago
0
ValueError: Cannot convert '5997' to a shape.
#83
WUD2018
closed
3 months ago
3
virus taxonomy only
#82
Caiyulu-818
closed
3 months ago
1
genomad hangs
#80
erinyoung
closed
3 months ago
2
High discrepancy between the high amount of viruses for geNomad and the low number of complete viruses
#79
bhagavadgitadu22
opened
4 months ago
5
Error at NN step when trying to process a single sample
#78
simroux
closed
3 months ago
16
Questions about geNomad
#77
lsj-666
closed
4 months ago
7
CLI option to set output prefix
#76
zclaas
opened
4 months ago
1
Inconsistency in number of genomes reported by genomad
#75
valentynbez
closed
4 months ago
7
Several questions about geNomad
#74
xjhzjucas
closed
4 months ago
2
How to run genomad on only complete sequences (DTR or ITR)?
#73
ZongzhiWu
opened
5 months ago
1
How IMG/PR database used in genomad
#72
Dx-wmc
closed
5 months ago
4
Provide prediction intervals
#71
apcamargo
opened
5 months ago
0
Purpose of the `BranchAttention` class in `igloo.py`
#70
a-piece-of-teemo
closed
5 months ago
1
Could you please explain the functions of these files？
#69
a-piece-of-teemo
closed
5 months ago
1
How to further develop on the basis of your code
#68
zzzfire
closed
5 months ago
3
Unable to download database v1.7.4
#67
SCWang429
closed
5 months ago
3
Include empty fields in taxonomy for easier parsing
#66
LanderDC
closed
2 months ago
6
undefined symbol error in end-to-end pipeline
#65
DOieGYuan
opened
6 months ago
5
How are the weights matrices calculated in the aggregated classification module？
#64
a-piece-of-teemo
closed
5 months ago
10
The xgboost model in the code and how to train the xgboost model
#63
ZoeLct
closed
5 months ago
1
Sorry I have one more question
#62
songmj86
closed
5 months ago
3
Inquiry on threshold
#61
songmj86
closed
6 months ago
2
Feature request: GBK/GFF as input
#60
alexweisberg
opened
6 months ago
2
How should genomad be used appropriately, when there are a huge number of assemblies to be processed.
#59
actledge
opened
6 months ago
1
The integrase on prophages and other viruses issue
#58
ChaoLab
closed
6 months ago
8
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