aqlaboratory proteinnet issues

aqlaboratory / proteinnet

Standardized data set for machine learning of protein structure

MIT License

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issues

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How to convert .cif to ProteinNet alike file?

#32 alpha-omega-labs opened 2 years ago
0
Next versions of CASP in ProteinNet

#31 alpha-omega-labs opened 2 years ago
0
Unmasked zeroed tertiary data in text-based CASP7

#30 memoryleak47 opened 2 years ago
5
How to process from the raw data on CASP?

#29 lKingslayer opened 3 years ago
0
Next releases

#28 FranceCosta opened 3 years ago
1
How to read this data ??

#27 OsamaGhandour opened 3 years ago
0
Duplicate training samples with different coordinates, PSSM and entropy

#26 tueboesen opened 4 years ago
1
small typo

#25 jacobjinkelly closed 4 years ago
1
Nomenclature Details

#24 HanneWhitt opened 4 years ago
1
IDs not matching PDB characteristics (chain number and ID, for instance)

#23 n4ndoz closed 4 years ago
4
Validation set

#22 Ieremie closed 4 years ago
1
PSSM length

#21 Ieremie opened 4 years ago
0
Secondary structure

#20 Ieremie closed 4 years ago
1
translate to korean

#19 Bue-von-hon closed 4 years ago
1
Hosting other data formats (hdf5)

#18 lucidrains opened 4 years ago
0
Which metrics to use for model evaluation ?

#17 George3d6 opened 4 years ago
0
General discrepancies between ProteinNet and mmCIF/PDB files (biopython)

#16 thavlik closed 4 years ago
7
Fix the parser's 404 link in proteinnet_records.md

#15 philipxyc closed 4 years ago
0
Some [ID] entries in the text version do not adhere to the documented format

#14 oskar-taubert closed 4 years ago
2
entry 1KTR_2_M in text/casp11/training_30

#13 oskar-taubert opened 4 years ago
0
3D protein structure prediction from sequence

#12 uoda opened 5 years ago
0
How should I parse the [TERTIARY] section of a ProteinNet record file?

#11 rainwala opened 5 years ago
0
How are mask records generated?

#10 jonathanking opened 5 years ago
1
Unequal sequence length in MSA

#9 chris-clem closed 5 years ago
2
PSSM generation

#8 st4cks1defl0w closed 5 years ago
2
Interpreting the parser

#7 TrentBrick closed 5 years ago
7
Obtaining MSA data

#6 hypnopump closed 5 years ago
1
No secondary structure data in CASP12 TFRecord files. I didn't check others...

#5 ufimtsev opened 5 years ago
14
Units of measurement for 3D structure

#4 isaachenrion closed 6 years ago
1
Model and code of 'End-to-end differentiable learning of protein structure'

#3 benstaf closed 6 years ago
6
ProteinNet (predictive) and DiversityNet-Proteins (generative) benchmarks

#2 benstaf closed 6 years ago
1
Generate lists of PDB ids / chains for the training, validation and test sets

#1 ostrokach closed 6 years ago
2