arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
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coverageBed is not working properly #137

Open khaled-rahman opened 5 years ago

khaled-rahman commented 5 years ago

In A.bed file I have: chr1 0 100 chr1 100 200 chr2 0 100

In B.bed file I have: chr1 10 20 chr1 20 30 chr1 30 40 chr1 100 200

When I ran: coverageBed -a A.bed -b B.bed

It shows me following errors: ERROR: -counts, -d, -mean, and -hist are all mutually exclusive options.

Why is this happening?

I have tried an earlier version (v2.25.0) which is installed on a server. Only that version is working. All latter versions I installed, or installed in other servers are not working. I have installed that v2.25.0 on a server but still this new installation is not working. It would be very helpful, you could respond.