I've tried without success from the bedpe, but it gave me an error (related to duplicate pixels due to same peaks overlapping different bin). I believe this error can be avoided if I use tabix or .validpairs as input. (even better the latter format if possible).
However, I am unable to use the tabix format. I can't either load it on UCSC.
Trying to decompress didn't work either.
All my other outputs are fine.
$ which bgzip
/usr/local/bin/bgzip
$ which tabix
/usr/local/bin/tabix
$ hichipper --version
hichipper, version 0.7.7
Hi Caleb,
Sorry to bother again, but I was wondering if by any chance you had to convert any of the hichipper output files to the .cool format. https://cooler.readthedocs.io/en/latest/cli.html#cooler-load
I've tried without success from the bedpe, but it gave me an error (related to duplicate pixels due to same peaks overlapping different bin). I believe this error can be avoided if I use tabix or .validpairs as input. (even better the latter format if possible).
However, I am unable to use the tabix format. I can't either load it on UCSC. Trying to decompress didn't work either. All my other outputs are fine.
Any idea what may be wrong?
Best
Raphael