aryeelab hichipper issues

aryeelab / hichipper

A preprocessing and QC pipeline for HiChIP data

MIT License

33 stars 12 forks source link

issues

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Error message regarding 'x' values

#46 uklejaj opened 6 years ago
3
question about error message

#45 jakeukleja closed 6 years ago
2
Provided hg19 restriction fragment file includes 0bp entry

#44 afrendeiro opened 6 years ago
1
R dependencies are hard to figure out

#43 mpschr opened 6 years ago
12
Add option to keep temporary files

#42 afrendeiro closed 6 years ago
3
Error in .Call2("NCList_find_overlaps_in_groups", start(q), end(q), q_space

#41 dongxiaota closed 6 years ago
2
Error in .Call2("NCList_find_overlaps_in_groups", start(q), end(q)

#40 dongxiaota closed 6 years ago
0
Data test exception

#39 tiagochst opened 6 years ago
3
About html report

#38 werhoog opened 6 years ago
1
Error in { : task 1 failed - "need at least four unique 'x' values"

#37 cjt5 closed 6 years ago
6
About output file of *****.gz.txt

#36 werhoog closed 6 years ago
2
About Macs2 parameter

#35 werhoog opened 6 years ago
8
.yaml round trip

#34 caleblareau closed 5 years ago
0
If there any output file about peak calling

#33 werhoog closed 6 years ago
2
Rscript requirementsInstall.R fails with error in install.packages

#32 sowmyaiyer closed 6 years ago
1
Bedtools does not exist, but we need it

#31 werhoog closed 6 years ago
2
Facile integration to WashU genome browser

#30 caleblareau closed 6 years ago
1
Hichipper with HiCUP input

#29 rdali opened 6 years ago
3
Use HiC-Pro allValidPairs as input

#28 martinaryee opened 7 years ago
7
ERROR: Missing hic_results or bowtie_results files for sample

#27 jing-wan closed 7 years ago
2
Incomplete HTML output in test data and real data.

#26 jamesdalg closed 7 years ago
2
Warning messages in QC report generation

#25 0xaf1f closed 7 years ago
2
Rendering HTML reports

#24 caleblareau closed 7 years ago
1
empty interaction

#23 lijiacd985 closed 7 years ago
7
About the *.filt.intra.loop_counts.bedpe format

#22 lijiacd985 closed 7 years ago
4
Add a Gitter chat badge to README.md

#21 gitter-badger closed 7 years ago
1
Added regular expression to discard unnecessary input files

#20 caleblareau closed 7 years ago
0
support absolute file paths

#19 caleblareau closed 6 years ago
1
chipseq input

#18 sb5169 closed 7 years ago
2
"Column index must be at most 0 if positive, not 1" error

#17 stayingsong closed 7 years ago
4
Can't get right results for simple usage example

#16 Jiluzhang closed 7 years ago
3
Inflated alignment stats

#15 caleblareau opened 7 years ago
3
REpairs file

#14 caleblareau closed 7 years ago
1
v0.4.4 < version < v0.5.6 -- duplicates

#13 caleblareau closed 7 years ago
1
describe scenarios in the artwork in parameter exp.

#12 caleblareau closed 7 years ago
0
bedtools test isn't good

#11 caleblareau closed 7 years ago
1
qc reports update for version 0.5.0

#10 caleblareau closed 7 years ago
0
UCSC loop compatibility

#9 caleblareau closed 7 years ago
2
memory issues

#8 caleblareau closed 6 years ago
0
split files in hicpro

#7 skyingg closed 7 years ago
10
keep samples flag

#6 caleblareau closed 7 years ago
1
permissions associated with making QC report

#5 caleblareau closed 7 years ago
1
Absolute file path

#4 caleblareau closed 7 years ago
1
merge attempt2

#3 caleblareau closed 8 years ago
0
merge per MJA edits

#2 caleblareau closed 8 years ago
1
README suggestion: Add workflow overview figure

#1 martinaryee closed 7 years ago
2