The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/
Apache License 2.0
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Create an example for building bio NER pipeline #63
In ForteHealth, we incorporate ScispaCy for bio ner annotation, I think, as the very first example, we can simply create a pipeline for bio NER annotation. The demo from scispacy is here
In scispacy, with model _en_ner_bc5cdrmd, we can annotate Disease and Chemical, with model _en_ner_bionlp13cgmd, we can annotate Cancer, Organ, etc. We can also show this by using different configuration to build the pipeline.
Describe the solution you'd like
In ForteHealth, we incorporate ScispaCy for bio ner annotation, I think, as the very first example, we can simply create a pipeline for bio NER annotation. The demo from scispacy is here
In scispacy, with model _en_ner_bc5cdrmd, we can annotate Disease and Chemical, with model _en_ner_bionlp13cgmd, we can annotate Cancer, Organ, etc. We can also show this by using different configuration to build the pipeline.
Possible included componets: