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atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
MIT License
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Compute the EggNOG table #74

Closed YY-SONG0718 closed 2 years ago

YY-SONG0718 commented 2 years ago

Dear Dr Tarashansky,

Thank you so much for creating this amazing method. I wonder if you could please give a short instruction on how to compute the EggNOG table as in example_data/eggnog? I would like to perform a functional enrichment analysis post-samap.

Kind regards, Yuyao

philoel commented 2 years ago

Hi Yuyao,

I'm the furthest from an expert possible, but perhaps you are having a similar question I asked a colleague when I started something similar.

In that case, just submit your proteome(s) to emapper and the output is an eggnog table. You can also run it/compute it your computer if you want to install it and do so. http://eggnog-mapper.embl.de/

Maybe that helps :) Phil

YY-SONG0718 commented 2 years ago

Hi Yuyao,

I'm the furthest from an expert possible, but perhaps you are having a similar question I asked a colleague when I started something similar.

In that case, just submit your proteome(s) to emapper and the output is an eggnog table. You can also run it/compute it your computer if you want to install it and do so. http://eggnog-mapper.embl.de/

Maybe that helps :) Phil

Hi Phil,

Thank you so much for your kind response, this is very helpful! :)

Best regards, Yuyao