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atarashansky / SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
MIT License
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samalg can't import. #88

Closed Ray569743422 closed 2 years ago

Ray569743422 commented 2 years ago

Traceback (most recent call last): File "/dellfsqd2/ST_OCEAN/USER/wangrui21/03.software/SAMap/samap/mapping.py", line 9, in from samalg import SAM ModuleNotFoundError: No module named 'samalg'

When I execut "python samap/mapping.py", I meet this error. How to fix it?

atarashansky commented 2 years ago

Please look at the vignette for example on how to use: https://github.com/atarashansky/SAMap/blob/main/SAMap_vignette.ipynb

samap/mapping.py is not runnable from the command line.

DinithiRajapaksha commented 1 year ago

Hi, I get the following error. I have installed SAMap following the vignette. Can you please help me to resolve this issue

ModuleNotFoundError Traceback (most recent call last) Cell In[1], line 1 ----> 1 from samap.mapping import SAMAP 2 from samap.analysis import (get_mapping_scores, GenePairFinder, 3 sankey_plot, chord_plot, CellTypeTriangles, 4 ParalogSubstitutions, FunctionalEnrichment, 5 convert_eggnog_to_homologs, GeneTriangles) 6 from samalg import SAM

File ~\samap_directory\samap__init__.py:4 2 import scipy as sp 3 import numpy as np ----> 4 import samalg.utilities as ut 5 import warnings 6 import scanpy as sc

ModuleNotFoundError: No module named 'samalg'

atarashansky commented 1 year ago

Can you run pip install sam-algorithm and try again?