aws-samples amazon-omics-tutorials issues

aws-samples / amazon-omics-tutorials

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create_parameter_json_from_nfcore_schema.py - issue

#62 hmkim opened 1 week ago
0
new script to parse the nextflow_schema.json in nf-core pipelines to …

#61 nbulsara closed 2 weeks ago
0
Pwyming dev

#60 wleepang closed 3 weeks ago
0
Fixed hisat2/align/main.nf: perl script manipulation via sed replacement in HISAT2_ALIGN/main.nf to set ~/tmp to ./tmp

#59 a1ultima closed 3 weeks ago
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Fix HISAT2_ALIGN to handle index files with trailing characters, e.g. ".ht2l" (l for Large)

#58 a1ultima closed 3 weeks ago
0
Monitoring CPU and memory usage

#57 hoyu310 closed 1 month ago
2
adding find_duplicate_read_sets

#56 djemec closed 3 months ago
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allow private ecr repositories as process container

#55 nbulsara closed 3 months ago
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Fix various typographical errors

#54 pxie2016 closed 3 months ago
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Reference store sequences as reference

#53 dgoswamia opened 5 months ago
1
fix typo

#52 wleepang closed 5 months ago
0
Refactor ecr helper

#51 wleepang closed 5 months ago
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scrnaseq.nf failure with engine error 'NFCORE_SCRNASEQ:SCRNASEQ:MULTIQC'

#50 YinCai2796 opened 5 months ago
0
Error while using compute_pricing.py

#49 nbulsara closed 6 months ago
3
Update README.md

#48 ariellasasson closed 6 months ago
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Update compute_pricing.py

#47 ajfriedman18 closed 6 months ago
1
Allow run name to be none when computing cost of a run

#46 smlchen closed 6 months ago
1
container-puller: use cwl-utils to automatically extract the container names

#45 mr-c opened 6 months ago
0
Include workflow definition

#44 jwarnn opened 6 months ago
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adding manifest generator to utility script

#43 ariellasasson closed 7 months ago
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remove nextflow pull command for non existent repo

#42 nbulsara closed 7 months ago
0
Update base.config

#41 ajfriedman18 closed 6 months ago
1
fix numeric check to string check to recognize aws profile

#40 nbulsara closed 8 months ago
0
lint fixes

#39 markjschreiber closed 8 months ago
0
Bump @babel/traverse from 7.21.2 to 7.23.2 in /utils/cdk/omx-ecr-helper

#38 dependabot[bot] closed 8 months ago
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make inspect_nf compatible with new registry specification from nfcore

#37 nbulsara closed 8 months ago
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Update 200-omics_storage.ipynb

#36 wleepang closed 8 months ago
0
adds nvcr.io to registries

#35 markjschreiber closed 8 months ago
1
Add nvcr.io to supported registries

#34 markjschreiber closed 8 months ago
1
add new workflows

#33 nbulsara closed 9 months ago
3
fix cost reported when requested storage is lower than mininmum allowed capacity

#32 wleepang closed 10 months ago
0
fix issue #30

#31 wleepang closed 10 months ago
0
Manifest containing multiple versions of same image fails

#30 Tmacphee13 closed 10 months ago
1
fix duration calc: use .total_seconds() instead of .seconds

#29 wleepang closed 10 months ago
0
compute run costs using new instanceType info from GetRunTask API

#28 wleepang closed 10 months ago
0
Bump protobuf from 3.20.1 to 3.20.2 in /example-workflows/protein-folding/containers/alphafold-data/alphafold

#27 dependabot[bot] closed 11 months ago
0
Bump numpy from 1.21.6 to 1.22.0 in /example-workflows/protein-folding/containers/alphafold-data/alphafold

#26 dependabot[bot] closed 11 months ago
0
remove unused local container build functions

#25 wleepang closed 11 months ago
0
Use GATK and GOTC container images that use Amazon Corretto 11

#24 wleepang closed 11 months ago
0
Container for GATK without UseShenandoahGC

#23 YinCai2796 closed 11 months ago
1
Ktzouvanaws dev helpers

#22 ktzouvanaws closed 11 months ago
0
Bump scipy from 1.7.0 to 1.10.0 in /example-workflows/protein-folding/containers/alphafold-data/alphafold

#21 dependabot[bot] closed 11 months ago
0
Bump scipy from 1.7.0 to 1.10.0 in /example-workflows/protein-folding/containers/alphafold-predict/alphafold

#20 dependabot[bot] closed 11 months ago
0
update analytics tutorial to run in all Omics supported regions

#19 wleepang closed 1 year ago
0
Bump aws-cdk-lib from 2.66.0 to 2.80.0 in /utils/cdk/omx-ecr-helper

#18 dependabot[bot] closed 1 year ago
0
manifest generated incorrectly for processes that have 'nfcore' registry

#17 nbulsara closed 1 year ago
1
Make Storage tutorial work in all Omics regions

#16 wleepang closed 1 year ago
0
Bump protobuf from 3.20.1 to 3.20.2 in /example-workflows/protein-folding/containers/alphafold-predict/alphafold

#15 dependabot[bot] closed 1 year ago
0
Bump numpy from 1.21.6 to 1.22.0 in /example-workflows/protein-folding/containers/alphafold-predict/alphafold

#14 dependabot[bot] closed 11 months ago
0
Bump tensorflow-cpu from 2.9.0 to 2.11.1 in /example-workflows/protein-folding/containers/alphafold-data/alphafold

#13 dependabot[bot] closed 11 months ago
0