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bagherilab
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ARCADE
ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments
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Make default cell class behavior consistent between implementations
#123
jessicasyu
opened
1 day ago
0
Implement dot product and cross product functions
#122
Jannetty
opened
1 day ago
0
Implement Vector class
#121
Jannetty
opened
1 day ago
0
Update MiniBox to support Bernoulli distribution
#120
jessicasyu
opened
1 day ago
0
Add setup file documentation
#119
jessicasyu
opened
1 day ago
0
Add publication abstracts to docs
#118
jessicasyu
closed
2 days ago
0
Add rotateVectorAroundAxis function to Plane class with tests
#117
Jannetty
closed
1 day ago
0
Add functionality to rotate normal vector of Plane
#116
Jannetty
closed
1 day ago
0
Add getString method to Parameters class
#115
Jannetty
closed
3 days ago
0
Add apoptosis age to induce change to apoptotic state
#114
cainja
closed
6 days ago
0
Add function to access popParameter String values by key in Parameters class
#113
Jannetty
closed
3 days ago
1
Update minibox filter function to support multiple tag separators
#112
Jannetty
closed
1 day ago
3
Minibox filter function can only identify keys with one tag separator
#111
Jannetty
closed
1 day ago
0
Parameterize Poisson distributions for fly cell cycle lengths
#110
Jannetty
opened
1 week ago
0
Make parameter that specifies relative critical volume of GMCs to stem cells
#109
Jannetty
opened
1 week ago
0
Add balancing function that correctly balances voxels after asymmetrical cell division
#108
Jannetty
closed
1 week ago
1
Release v3.2.0
#107
bagheri-lab-bot[bot]
closed
1 week ago
0
Bump webrick from 1.8.1 to 1.8.2 in /docs
#106
dependabot[bot]
opened
1 week ago
0
Bump rexml from 3.3.7 to 3.3.9 in /docs
#105
dependabot[bot]
opened
1 week ago
0
Bump google-protobuf from 4.28.1 to 4.28.2 in /docs
#104
dependabot[bot]
opened
1 week ago
0
Add criticalAge to induce apoptosis
#103
cainja
closed
1 week ago
3
CARCADE Refactor 1: Refactor Classes to Support Addition of New Agent, Module, or Action
#102
allison-li-1016
opened
1 week ago
0
CARCADE refactor into v3
#101
allison-li-1016
opened
1 week ago
0
Update workflows for changelog releases and Jekyll docs
#100
jessicasyu
closed
1 week ago
0
Fix passing in initial glucose as a parameter value
#99
allison-li-1016
closed
2 weeks ago
0
Hot fix for passing in glucose concentration
#98
allison-li-1016
closed
2 weeks ago
0
Implement cell cycle length tracking
#97
pohaoc2
closed
1 week ago
4
Pass initial glucose concentration as parameter for metabolism modules
#96
allison-li-1016
closed
2 weeks ago
0
Pass in Initial Glucose Concentration as a parameter for PatchProcessMetabolism
#95
allison-li-1016
closed
2 weeks ago
0
Make PatchActionConvert reuse old cell processes
#94
allison-li-1016
opened
2 weeks ago
2
Pass in Initial Glucose Concentration as a parameter for PatchProcessMetabolism
#93
allison-li-1016
closed
2 weeks ago
0
Race condition on updateExternal() method call in PatchProcessMetabolism
#92
allison-li-1016
opened
2 weeks ago
3
Test fly cell classes
#91
Jannetty
opened
2 weeks ago
0
Implement probablistic rotation of plane of division using new setup file distribution specification framework
#90
Jannetty
closed
1 week ago
1
Implement radiation therapy process in v3
#89
jacob-evarts
opened
2 weeks ago
0
Implement radiation therapy in v3
#88
jacob-evarts
opened
2 weeks ago
0
Implement chemotherapy treatment in v3
#87
jacob-evarts
opened
2 weeks ago
0
Implement cell cycle tracking
#86
pohaoc2
closed
2 weeks ago
2
Add support for parameter distributions
#85
jessicasyu
closed
4 weeks ago
3
Add GraphSites serializer and deserializer
#84
cainja
opened
1 month ago
0
Refactor plane constructor to take Double3D instead of Int3D
#83
Jannetty
closed
4 weeks ago
1
Make Plane constructors take Double3Ds instead of Int3Ds
#82
Jannetty
closed
3 weeks ago
0
Add support for different patch initialization schemes
#81
jessicasyu
closed
1 month ago
0
Implement CellParameters subclass and update Cell constructors to reflect change
#80
cainja
closed
3 weeks ago
0
Add environmental logging to V3
#79
allison-li-1016
opened
1 month ago
0
Implement accuracy and affinity when selecting best location
#78
cainja
opened
1 month ago
0
Add PRNG seed or failing inputs to output of monkey tests
#77
cainja
opened
1 month ago
0
Add support for linked populations in setup file
#76
jessicasyu
closed
1 month ago
1
Update cell constructors to use container
#75
jessicasyu
closed
1 month ago
0
Update cell make method to return container
#74
jessicasyu
closed
1 month ago
0
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