This issue serves as a central place to list changes that need to be made for the stable release of the documentation (v0.4.0). The current documentation for this release is copied over from the development documentation, so in many cases, we need to remove references to new capabilities. The source code for these docs can be found in the v0.4.0-prod-docs branch.
[x] Remove the download app. v0.4.0 of MIPTools only contains the original app for downloading data from basespace which runs a python script
[x] Remove additional arguments from the wrangler app that refer to downsampling of UMIs.
[x] Remove discussion about freezing software versioning on the installation page.
This issue serves as a central place to list changes that need to be made for the stable release of the documentation (v0.4.0). The current documentation for this release is copied over from the development documentation, so in many cases, we need to remove references to new capabilities. The source code for these docs can be found in the
v0.4.0-prod-docsbranch.-hflag from all man pages