Closed YaoYinYing closed 6 months ago
Hi, this PR transforms RF2AA as a pip installable module to allow one run it anywhere.
BLAST and CS-BLAST are now placed in $CONDA_PREFIX/share/ according to these comments: https://github.com/baker-laboratory/RoseTTAFold-All-Atom/issues/5#issuecomment-1990991606 https://github.com/RosettaCommons/RoseTTAFold/issues/13#issuecomment-1405850297
$CONDA_PREFIX/share/
Also, the keywords of database_params in base.yaml is slightly changed. These will be passed to make_msa.sh and preprocessing.py.
database_params
base.yaml
make_msa.sh
preprocessing.py
Hi, this PR transforms RF2AA as a pip installable module to allow one run it anywhere.
BLAST and CS-BLAST are now placed in
$CONDA_PREFIX/share/according to these comments: https://github.com/baker-laboratory/RoseTTAFold-All-Atom/issues/5#issuecomment-1990991606 https://github.com/RosettaCommons/RoseTTAFold/issues/13#issuecomment-1405850297Also, the keywords of
database_paramsinbase.yamlis slightly changed. These will be passed tomake_msa.shandpreprocessing.py.