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bcbio / bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
https://bcbio-nextgen.readthedocs.io
MIT License
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documentation request: pool-seq user story #3669

Open mjsduncan opened 2 years ago

mjsduncan commented 2 years ago

i'm a newbie to sequencing analysis & working on a pooled sample project for the first time. i've found this slide deck from Yeaman lab to be helpful, but expert curated examples of pooled sample DNA variant calling and RNAseq abundance & other pipelines in one place would be very useful.

thanks to all for continuing to develop and maintain this project.

naumenko-sa commented 2 years ago

Hi @mjsduncan ! our documentation is here: https://bcbio-nextgen.readthedocs.io/en/latest/index.html Unfortunately, we are not doing joint DNA+RNA analysis. You could run a DNA variant calling and RNA-seq alignment/abundance separately. SN