When running read_analysis.py using base quality and chimeric characterization, parameters could not be determined for unmapped bases in base quality model, leading to an error when using the model for simulation
Issue was that the fastq flag was not being passed properly to the function parsing the alignment file
read_analysis.pyusing base quality and chimeric characterization, parameters could not be determined for unmapped bases in base quality model, leading to an error when using the model for simulation