search

bcgsc / RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads
Other
85 stars 7 forks source link

Filter output by coverage? #12

Closed xuesoso closed 2 years ago

xuesoso commented 3 years ago

Hi,

Just wondering if it's possible to get an average coverage for each assembled transcript? Or can we filter the output transcripts based on a coverage threshold? Thanks!

kmnip commented 3 years ago

Hi @xuesoso

I can add this feature in the output transcripts. You may also filter the coverage of k-mers with the -c option when you launch the assembly.

Ka Ming