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bcm-uga / pcadapt

Performing highly efficient genome scans for local adaptation with R package pcadapt v4
https://bcm-uga.github.io/pcadapt
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Error in UseMethod("pcadapt") : no applicable method for 'pcadapt' applied to an object of class "character" #21

Closed Carol-Symbiomics closed 5 years ago

Carol-Symbiomics commented 5 years ago

Hello,

Recently, I've tried to use pcadapt but I have failed. I used the same command that worked in the past without success. I've either converted my vcf file into pcadapt format or read the vcf directly using the read.pcadapt

spis306pcadapt <- read.pcadapt("./pop.gen.analyses/spis.filterdDocent.filterrad.final.recode.vcf", type = "vcf") test <- pcadapt("spis306pcadapt", K=20)

Error in UseMethod("pcadapt") : no applicable method for 'pcadapt' applied to an object of class "character"

I don't know what is wrong, could you please assist?

Sincerely,

Carol

privefl commented 5 years ago

Don't use the quotes around spis306pcadapt.