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bdzyubak / tensorflow-sandbox

A repository for studying applications of Deep Learning across fields, and demonstrating samples of my code and project managment
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Implement module to segment cell nuclei #4

Closed bdzyubak closed 2 years ago

bdzyubak commented 2 years ago

As an example with readily available data, we will start comparing performance of state of the art models on a cell segmentation datasets.

This request is to find labeled data and implement training/validation of any modern deep learning model, to which performance of other models will be compared.

bdzyubak commented 2 years ago

Test dataset can be found here: https://morioh.com/p/11231a697d59

Added U-NET based segmentation from the open source tutorial on the same page. U-NET is something I use actively for work, so I will not be customizing it for the purposes of this study. e330d9583c983fbef2d73f15eed2616399ab78f3

bdzyubak commented 2 years ago

Segmentation results are: dice_coef: 0.7560 @ 10 epochs. 2 hours 18 min.

Total parameters: 31 mil Model size: 364 MB

CellNucleiSegmentationLearningHistory_UNET.docx