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beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees
http://beast.community
GNU Lesser General Public License v2.1
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Wrong deafult setting for microsatellite substitution models #973

Closed carlopacioni closed 7 months ago

carlopacioni commented 6 years ago

When generating an xml file for microsatellite data analysis with EL1, EL2, PC1 or PC2 substitution models in BEAUti 1.8.4, I believe that the argument estimateSubmodelParameters of the node LINEARBIASModel takes the wrong value. I think it should take the value false for EL and true for PC substitution models.

Thanks!

rambaut commented 7 months ago

Microsatellites are depricated in BEAUti now.