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bede / hostile

Precise host read removal
MIT License
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Running multiple hostile instances on same input file(s) corrupts decontamination statistics #13

Closed bede closed 8 months ago

bede commented 1 year ago

Running multiple instances of Hostile on the same FASTQs in the same directory corrupts decontamination statistics since they will write to the same count files. Could fix by putting these inside a tempfile.TemporaryDirectory CM.

bede commented 1 year ago

Going to be really painful without first refactoring around Task and Batch classes (#26). Low priority but leaving open.

bede commented 8 months ago

As per #26, I don't think that an elegant solution to this minor issue is worthwhile