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benedictpaten / marginAlign

UCSC Nanopore
MIT License
43 stars 13 forks source link

Assembly hub (changing realignment from global to local) #7

Closed mitenjain closed 9 years ago

mitenjain commented 9 years ago

link to hub: http://hgwdev.soe.ucsc.edu/~miten/ecoli_hub/hub.txt link to assembly hub on browser: http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=miten&hgS_otherUserSessionName=Test_hub_40127_E.coli_K12 link to hub on hgwdev: /cluster/home/miten/public_html/ecoli_hub

benedictpaten commented 9 years ago

Fixed on localCoordinates branch - but needs testing. Will close this issue when testing complete and pushed to master.

mitenjain commented 9 years ago

Utility to create Assembly Hub done. To be tested on E. coli data shortly.

benedictpaten commented 9 years ago

Miten - please test.

mitenjain commented 9 years ago

Tested successfully on 10 E.coli test reads (lengths up to 11 kb).