Instead of attempting to converge the outputs of all three analysis levels into a single output directory, use a structure more faithful to the development of BIDS Derivatives:
Outputs from the tool will always be in a directory named "MRtrix3_connectome".
The three analysis levels will each create their own sub-directory of the above.
Note that this also includes a rename of the "participant1" and "participant2" analysis levels to "preproc" and "participant".
While it is possible to feed data from some other DWI pre-processing BIDS App into the "participant"-level processing by providing that BIDS Derivatives location as the "BIDS input", the same will not currently work for group-level analysis, due to the current mechanism of b=0 intensity normalisation.
Also includes the capability to run through group-level analysis with a single session.
Instead of attempting to converge the outputs of all three analysis levels into a single output directory, use a structure more faithful to the development of BIDS Derivatives:
Outputs from the tool will always be in a directory named "MRtrix3_connectome".
The three analysis levels will each create their own sub-directory of the above.
Note that this also includes a rename of the "
participant1" and "participant2" analysis levels to "preproc" and "participant".While it is possible to feed data from some other DWI pre-processing BIDS App into the "
participant"-level processing by providing that BIDS Derivatives location as the "BIDS input", the same will not currently work for group-level analysis, due to the current mechanism of b=0 intensity normalisation.Also includes the capability to run through group-level analysis with a single session.