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bids-standard / BEP028_BIDSprov

Organizing and coordinating BIDS extension proposal 28 : BIDS Provenance
https://bids.neuroimaging.io/bep028
Creative Commons Attribution 4.0 International
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[Bug]: Current jsonld files do not store jsonld graphs #121

Closed satra closed 1 year ago

satra commented 1 year ago

batch name and line

No response

What happened?

this is taking one of the examples to jsonld playground.

https://tinyurl.com/ynhdr9ek

you'll see all forms of it are empty. i haven't tracked the context changes, but likely the culprit. we should also add tests for jsonld expansion and compactness in the github workflow.

Describe the expected ground-truth ?

to be able to visualize the graph

What soft is concerned

No response

cmaumet commented 1 year ago

Hi @satra ! Thanks for spotting this! You are right: this example is outdated and do not match the current context.

Am I right this is the one you looked at: https://github.com/bids-standard/BEP028_BIDSprov/tree/master/examples/spm_default ?

All examples created by the parsers work fine, see for example spm_default on JSON-LD 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which is a copy of https://github.com/bids-standard/BEP028_BIDSprov/blob/master/examples/from_parsers/spm/spm_default_batch.jsonld vizualised as (using our vizualizer based on pyld+rdflib+prov lib):

I'll into this and will likely remove this outdated example as we now have many others generated by the parsers.