Running plasma datasets with the entrapment protein DB

bigbio / multiomics-configs

Set of config files for species, taxonomies, etc

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Running plasma datasets with the entrapment protein DB #241

Open ypriverol opened 10 months ago

ypriverol commented 10 months ago

We have to re-run all the datasets in plasma with the entrapment strategy to make sure that the new algorithm for global q-value adjustment can be run. Datasets:

[ ] PXD039236
[ ] PXD004242
[X] PXD017052 DIA
[X] PXD017052 DDA
[X] MSV000079033 ITRAQ
[X] PXD013231 DDA
[X] PXD013231 DIA
[X] PXD039023

ypriverol commented 10 months ago

This dataset PXD039236 is waiting for https://github.com/bigbio/quantms/issues/337#issuecomment-1889748226