Need to adjust to varfish-cli changes

bihealth / cubi-tk

CUBI Tooling for SODAR, VarFish et al.

MIT License

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Need to adjust to varfish-cli changes #197

Closed holtgrewe closed 3 months ago

holtgrewe commented 1 year ago

Is your feature request related to a problem? Please describe. After bihealth/varfish-cli#61 we will have to adjust the call to varfish-cli as we cannot call main() directly any more.

Describe the solution you'd like Switch this to a subprocess.Popen() call.

Describe alternatives you've considered N/A

Additional context N/A

Nicolai-vKuegelgen commented 3 months ago

Implemented as of #222