bihealth / cubi-tk

CUBI Tooling for SODAR, VarFish et al.
MIT License
4 stars 6 forks source link

feat: Common functions for interfacing with python-irodsclient #202

Closed sellth closed 11 months ago

sellth commented 1 year ago

fixes #200

Note: Uploads cannot be cancelled by KeyboardInterrupt (caused by multiprocessing in irods client)

codecov[bot] commented 1 year ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (9026388) 77.84% compared to head (bab45a0) 79.84%. Report is 1 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #202 +/- ## ========================================== + Coverage 77.84% 79.84% +2.00% ========================================== Files 98 100 +2 Lines 7330 7701 +371 ========================================== + Hits 5706 6149 +443 + Misses 1624 1552 -72 ```

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sellth commented 1 year ago

I could dress up my "SODAR ingest anything" function as a pilot use case, but maybe we want to separate those PRs? Might be worth implementing the get functionality though.