bihealth / cubi-tk

CUBI Tooling for SODAR, VarFish et al.
MIT License
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New sodar downloader for Dragen data #226

Closed Nicolai-vKuegelgen closed 7 months ago

Nicolai-vKuegelgen commented 8 months ago

Is your feature request related to a problem? Please describe. The Dragen/Sodar/.../Varfush workflows need specific sets of files from Sodar (including different file types). It would be good to have a specific downloader for this.

Describe the solution you'd like A function that can download a set files based on specific (remote) file patterns. Ideally, one that comes with the option/technology to easily built other bulk downloaders.

Describe alternatives you've considered N/A

Additional context A new downloader class / function should directly use the new iRODSCommon classes (#208 )