fix: eb_filter wrapper assuming ANN/CSQ is present

bihealth / snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

MIT License

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fix: eb_filter wrapper assuming ANN/CSQ is present #506

Closed tedil closed 6 months ago

tedil commented 7 months ago

ANN/CSQ information is only present when the input VCFs are from variant annotation; however, it is also possible to skip annotation and filter non-annotated calls, in which case no ANN is available. I do not know anything about ebfilter, so I am not sure about the effect this change has (on non-annotated data only). edit This PR is based on #505

coveralls commented 7 months ago

coverage: 85.783% (+0.02%) from 85.764% when pulling b6315af52fb18ac2386b4230253b4cc243581013 on fix-eb-filter-nonexistent-ann into b9710883206aa9629c357940acf24bd03493fcd3 on main.