bihealth / snappy-pipeline

SNAPPY Nucleic Acid Processing in Python
MIT License
8 stars 4 forks source link

dependencies for VEP inconsistent #554

Closed mbenary closed 1 day ago

mbenary commented 2 days ago

In the wrapper for VEP the environment shows the following dependency for VEP is

in the run-folder the environment shows the dependency

When running the step somatic_variant_annotation with VEP it will throw the following error: image

in particular the issue comes with the version of VEP: image

Changing the dependency for VEP to ensembl-vep==109.3 in run seems to fix the issue.