bingxiao biopieces issues

bingxiao / biopieces

Automatically exported from code.google.com/p/biopieces

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

error downloading by svn

#50 GoogleCodeExporter opened 9 years ago
0
custom_require.rb:36:in `require'

#49 GoogleCodeExporter opened 9 years ago
0
read_fastq: "Error. You have specified 'C' as an Inline programming language."

#48 GoogleCodeExporter opened 9 years ago
6
write_fasta_files keeps too many file handles open

#47 GoogleCodeExporter closed 9 years ago
2
max_vals.out.1 typo error

#46 GoogleCodeExporter closed 9 years ago
1
pcr_seq example failed

#45 GoogleCodeExporter closed 9 years ago
2
missing tests for read_454 and write_454

#44 GoogleCodeExporter opened 9 years ago
0
Remove bzip2-ruby gem from requirements

#43 GoogleCodeExporter opened 9 years ago
0
read_fasta error

#42 GoogleCodeExporter closed 9 years ago
8
Translate does not accept Ns

#41 GoogleCodeExporter opened 9 years ago
1
Problem configuring biopieces

#40 GoogleCodeExporter closed 9 years ago
1
assemble_pairs error when pandaseq not installed

#39 GoogleCodeExporter closed 9 years ago
1
Biopieces: cant read the input fasta or fastq file

#38 GoogleCodeExporter closed 9 years ago
1
pcr_seq uses 3'-end to 5'-end reverse primer

#37 GoogleCodeExporter opened 9 years ago
0
blast_seq don't raise on missing index file

#36 GoogleCodeExporter opened 9 years ago
0
find_genes dont report gene sequences.

#35 GoogleCodeExporter opened 9 years ago
0
bwa_seq: sampe not supported

#34 GoogleCodeExporter opened 9 years ago
2
ruby version failing on automated installer

#33 GoogleCodeExporter closed 9 years ago
1
Compute concatenates?

#32 GoogleCodeExporter closed 9 years ago
2
pcr_seq, patscan_seq truncate SEQ_NAME fields at spaces

#31 GoogleCodeExporter opened 9 years ago
1
SAM reader behaviour

#30 GoogleCodeExporter closed 9 years ago
1
head_records err if Ruby Biopieces in the pipe

#29 GoogleCodeExporter opened 9 years ago
1
Make bowtie_seq check for the existence of the index before running.

#28 GoogleCodeExporter opened 9 years ago
0
Bad time stamps in Biopieces logfile

#27 GoogleCodeExporter opened 9 years ago
1
Error message after installing biopieces

#26 GoogleCodeExporter closed 9 years ago
6
test_plot_distribution fails with older versions of gnuplot

#25 GoogleCodeExporter opened 9 years ago
0
Patch for /trunk/code_perl/Maasha/Blast.pm

#24 GoogleCodeExporter closed 9 years ago
2
undefined method `to_time'

#23 GoogleCodeExporter closed 9 years ago
2
Verbose writing to screen all the time

#22 GoogleCodeExporter closed 9 years ago
1
format_genome calls undefined subroutine

#21 GoogleCodeExporter closed 9 years ago
9
PSL->KISS conversion error

#20 GoogleCodeExporter opened 9 years ago
1
plot_karyogram gives a ton of warnings

#19 GoogleCodeExporter opened 9 years ago
2
assemble_tag_contigs discarding some usable tags

#18 GoogleCodeExporter closed 9 years ago
3
read_solexa does not work correctly with decimal entries.

#17 GoogleCodeExporter closed 9 years ago
1
assemble_tag_contigs doesn't work

#16 GoogleCodeExporter closed 9 years ago
2
[deleted issue]

#15 GoogleCodeExporter closed 9 years ago
0
upload_to_ucsc create redundant my_tracks.ra entries

#14 GoogleCodeExporter opened 9 years ago
2
get_genome_align from bed files does not work correctly

#13 GoogleCodeExporter opened 9 years ago
1
upload_to_ucsc with rnaSecStr have stopped working

#12 GoogleCodeExporter opened 9 years ago
1
upload_to_ucsc writes ucsc.ra config in wrong format

#11 GoogleCodeExporter closed 9 years ago
1
Add switch to keep order of keys for write_tab

#10 GoogleCodeExporter closed 9 years ago
1
fixedStep score is off by 1 (+) when using upload_to_ucsc -w

#9 GoogleCodeExporter closed 9 years ago
1
vmatch_index only work with one sequnce.

#8 GoogleCodeExporter opened 9 years ago
2
Add comment line to write_blast

#7 GoogleCodeExporter closed 9 years ago
1
write_solid does not handle lower case sequences from the stream

#6 GoogleCodeExporter closed 9 years ago
1
remove the REC_TYPE key from split_seq

#5 GoogleCodeExporter closed 9 years ago
1
translate_seq does not recompute SEQ_LEN

#4 GoogleCodeExporter closed 9 years ago
1
analyze_vals should default analyze all keys - and have both --keys and --no_keys switches

#3 GoogleCodeExporter closed 9 years ago
2
analyze_vals should not print a table of its own, should rather put the result to stream and let write_tab do the printing.

#2 GoogleCodeExporter closed 9 years ago
2
analize_vals does not calculate the SUM correctly

#1 GoogleCodeExporter closed 9 years ago
1