biocaddie / WG3-MetadataSpecifications

WG3 Metadata Specification
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dbGaP #18

Closed RuilingLiu closed 8 years ago

RuilingLiu commented 8 years ago

transform column "$.'Study'.'Configuration'.'StudyNameReportPage'.'_$'" to "Study.Configuration.StudyNameReportPage"; unable to find metadata model

transform column "$.'Study'.'Configuration'.'StudyProjects'.'Project'" to "Study.StudyProjects.Project" unable to find metadatamodel

transform column "$.'Study'.'Configuration'.'Publications'.'Publication'[*].'Journal'.'@notes'" to "Study.Configuration.Publications.Publication[].Journal.@notes"; unable to find metadatamodel

transform column "$.'Study'.'Configuration'.'Diseases'.'Disease'[*].'@vocab_source'" to "Disease[].@vocab_source"; unable to find metadatamodel

transform column "$.'Study'.'Configuration'.'DisplayPublicSummary'.'_$'" to "Study.Configuration.DisplayPublicSummary" unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'DacInfo'.'DacEmail'.'_$'" to "Organization.emailAddress"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'DacInfo'.'DacPhone'" to "Organization.phoneNumber"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'@ref_ssDacId'" to "Study.AuthorizedAccess.Policy.@ref_ssDacId"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'DisplayResearchStatement'.'_$'" to "Study.AuthorizedAccess.Policy.DisplayResearchStatement"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'DisplayPublicSummary'.'_$'" to "Study.AuthorizedAccess.Policy.DisplayPublicSummary"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'EmbargoLength'.'_$'" to "Study.AuthorizedAccess.Policy.EmbargoLength"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'YearsUntilRenewal'.'_$'" to "Study.AuthorizedAccess.Policy.YearsUntilRenewal"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'WeeksCancelRequest'.'$'" to "Study.AuthorizedAccess.Policy.WeeksCancelRequest"; unable to find metadatamodel transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'PdfSupplementReqired'.'$'" to "Study.AuthorizedAccess.Policy.PdfSupplementReqired"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'AcknowledgementText'.'para'.'_$'" to "Study.AuthorizedAccess.Policy.AcknowledgementText.para"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'@ref_ssDacId'" to "Study.AuthorizedAccess.Policy.@ref_ssDacId"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'DisplayResearchStatement'.'_$'" to "Study.AuthorizedAccess.Policy.DisplayResearchStatement"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'DisplayPublicSummary'.'_$'" to "Study.AuthorizedAccess.Policy.DisplayPublicSummary"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'EmbargoLength'.'_$'" to "Study.AuthorizedAccess.Policy.EmbargoLength"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'YearsUntilRenewal'.'_$'" to "Study.AuthorizedAccess.Policy.YearsUntilRenewal"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'WeeksCancelRequest'.'_$'" to "Study.AuthorizedAccess.Policy.WeeksCancelRequest"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'PdfSupplementReqired'.'_$'" to "Study.AuthorizedAccess.Policy.PdfSupplementReqired"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'AcknowledgementText'.'para'.'_$'" to "Study.AuthorizedAccess.Policy.AcknowledgementText.para"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'Policy'.'DocumentSet'.'DataUseCertificate'.'@FileName'" to "Study.AuthorizedAccess.Policy.DocumentSet.DataUseCertificate.@FileName"; unable to find metadatamodel

transform column "$.'Study'.'AuthorizedAccess'.'ConsentGroups'.'ParticipantSet'[*].'@groupNum-REF'" to "Study.AuthorizedAccess.ConsentGroups.ParticipantSet[].@groupNum-REF"; similar to consent group groupnum above

transform column "$.'Study'.'AuthorizedAccess'.'ConsentGroups'.'ParticipantSet'[*].'ConsentName'.'_$'" to "Study.AuthorizedAccess.ConsentGroups.ParticipantSet[].ConsentName"; similar to consent group longname

transform column "$.'Study'.'AuthorizedAccess'.'ConsentGroups'.'ParticipantSet'[*].'ConsentAbbrev'.'_$'" to "Study.AuthorizedAccess.ConsentGroups.ParticipantSet[].ConsentAbbrev"; similar to consent group shortname

transform column "$.'Study'.'AuthorizedAccess'.'ConsentGroups'.'ParticipantSet'[*].'UseLimitation'.'_$'" to "Study.AuthorizedAccess.ConsentGroups.ParticipantSet[].UseLimitation"; unable to find metadata model

transform column "$.'Study'.'AuthorizedAccess'.'ConsentGroups'.'ParticipantSet'[*].'IrbRequired'.'_$'" to "Study.AuthorizedAccess.ConsentGroups.ParticipantSet[].IrbRequired"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@phd'" to "Study.Documents.Document[].@phd"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@type'" to "Study.Documents.Document[].@type"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@createDate'" to "Study.Documents.Document[].@createDate"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@modDate'" to "Study.Documents.Document[].@modDate"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@urlToXml'" to "Study.Documents.Document[].@urlToXml"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'@urlToHtml'" to "Study.Documents.Document[].@urlToHtml"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'OrigName'.'_$'" to "Study.Documents.Document[].OrigName"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'DisplayName'.'_$'" to "Study.Documents.Document[].DisplayName"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'Description'.'_$'" to "Study.Documents.Document[].Description"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'displayStatus'.'_$'" to "Study.Documents.Document[].displayStatus"; unable to find metadata model

transform column "$.'Study'.'Documents'.'Document'[*].'xmlStatus'.'_$'" to "Study.Documents.Document[].xmlStatus"; unable to find metadata model

transform column "$.'Study'.'Annotations'.'DocumentPart'[*].'@phd'" to "DataAnalysis.identifier.DocumentPart[].@phd"; unable to find metadata model

transform column "$.'Study'.'Annotations'.'DocumentPart'[*].'@sectionId'" to "Study.Annotations.DocumentPart[].@sectionId"; unable to find metadata model

transform column "$.'Study'.'Annotations'.'DocumentPart'[*].'phvList'.'phvRef'.'@variableId'" to "Study.Annotations.DocumentPart[].phvList.phvRef.@variableId"; unable to find metadata model

transform column "$.'Study'.'Annotations'.'DocumentPart'[].'phvList'.'phvRef'[].'@variableId'" to "Study.Annotations.DocumentPart[].phvList.phvRef[].@variableId"; unable to find metadata model

transform column "$.'Study'.'Annotations'.'DocumentPart'[*].'phvList'" to "Study.Annotations.DocumentPart[].phvList" unable to find metadata model

transform column "$.'Study'.'Analyses'.'Analysis'[*].'@genomeBuild'" to "Study.Analyses.Analysis[].@genomeBuild";

transform column "$.'Study'.'Analyses'.'Analysis'[*].'@snpBuild'" to "Study.Analyses.Analysis[].@snpBuild";

transform column "$.'Study'.'Analyses'.'Analysis'[*].'@analysisType'" to "Study.Analyses.Analysis[].@analysisType";

transform column "$.'Study'.'Analyses'.'Analysis'[*].'Description'.'_$'" to "DataAnalyses.description[]".@analysis;

transform column "$.'Study'.'Analyses'.'Analysis'[*].'Method'.'_$'" to "Study.Analyses.Analysis[].Method";

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'@probeNum'" to "Study.Analyses.Analysis[].GtyPlatform.@probeNum"; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'@snpBatchId'" to "Study.Analyses.Analysis[].GtyPlatform.@snpBatchId"; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'Vendor'.'_$'" to "Study.Analyses.Analysis[].GtyPlatform.Vendor"; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'VendorURL'" to "Study.Analyses.Analysis[].GtyPlatform.VendorURL"; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'Platform'.'_$'" to "Study.Analyses.Analysis[].GtyPlatform.Platform"; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'Comment'" to "Study.Analyses.Analysis[].Comment"; unble to find metadata model; Unsure what GtyPlatform is referring to

transform column "$.'Study'.'Analyses'.'Analysis'[*].'GtyPlatform'.'VendorURL'.'_$'" to "Study.Analyses.Analysis[].GtyPlatform.VendorURL"; Unsure what GtyPlatform is referring to

agbeltran commented 8 years ago

The elements that are not found in the DATS model, can be dealt with through the extension mechanism (see ExtraProperty). If there is anything else we need to consider please, re-open the issue with more details. cc @RuilingLiu @jgrethe Thanks!