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Used to report and track bioCADDIE prototype issues
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[LINCS] LDS-1229 Title on datamed does not match the LINCS dataset landing pages. #158

Open chung88 opened 7 years ago

chung88 commented 7 years ago

1.- Go to link: https://datamed.org/display-item.php?repository=0004&idName=dataset.title&id=56d0fe03e4b0cd9ed8fc739d&query=LINCS

2.- Read dataset title: "Title: LINCS Pilot Phase Joint Project: Sensitivity measures of six breast cancer cell lines to a library of small molecule kinase inhibitors (single drug treatments). Dataset 4 of 7: Mean cell count and growth rate across biological replicate 1."

3.- Click on the link: download URL: http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1229

4.- Read dataset title: "Dataset Name LINCS Pilot Phase Joint Project: Sensitivity measures of six breast cancer cell lines to a library of small molecule kinase inhibitors (single drug treatments). Dataset 4 of 15: Mean cell count and mean growth rate across biological replicate 1."

Title on datamed does not match the LINCS dataset landing pages.

jgrethe commented 7 years ago

This is due to the crawling frequency - currently we have been issuing new data with new releases of the UI. The current index for 1.5 has the updated information:

[{ "took": 1, "timed_out": false, "_shards": { "total": 5, "successful": 5, "failed": 0 }, "hits": { "total": 1, "max_score": 0.3718034, "hits": [ { "_index": "lincs_20161025", "_type": "dataset", "_id": "580fd35c5152c648c68d0c26", "_score": 0.3718034, "_source": { "dataset": { "availability": "available", "aggregation": "instance of dataset", "privacy": "not applicable", "refinement": "curated", "ID": "LDS-1229", "version": "1548828255564333056", "dateModified": "20160309", "dateReleased": "20150825", "title": "LINCS Pilot Phase Joint Project: Sensitivity measures of six breast cancer cell lines to a library of small molecule kinase inhibitors (single drug treatments). Dataset 4 of 15: Mean cell count and mean growth rate across biological replicate 1.", "creators": [ "Peter K. Sorger" , "Marc Hafner" , "Mario Niepel" ], "types": [ "Imaging" , "Cytological profile" ] }, "datasetDistributions": [ { "format": "HTML", "storedIn": "LINCS", "qualifier": "not compressed", "accesstypes": "landing page", "authorization": "none", "authentication": "none", "accessURL": "http://lincs.hms.harvard.edu/db/datasets/LDS-1229/results" } , { "format": "CVS", "storedIn": "LINCS", "qualifier": "not compressed", "accesstypes": "download", "authorization": "none", "authentication": "none", "accessURL": "http://lincs.hms.harvard.edu/db/datasets/LDS-1229/results?search=&output_type=.csv" } , { "format": "XLSX", "storedIn": "LINCS", "qualifier": "not compressed", "accesstypes": "download", "authorization": "none", "authentication": "none", "accessURL": "http://lincs.hms.harvard.edu/db/datasets/LDS-1229/results?search=&output_type=.xlsx" } ], "dataRepository": { "ID": "SCR:006454", "name": "Library of Integrated Network-Based Cellular Signatures", "homePage": "http://www.lincsproject.org" }, "access": { "landingPage": "http://lincs.hms.harvard.edu/db/datasets/LDS-1229/" }, "organization": { "abbreviation": "HMS_LINCS", "name": "HMS LINCS (Harvard Medical School)" }, "biologicalProcess": { "name": [ "Cell proliferation" ] }, "cellLine": { "name": [ "Hs 578T" , "MCF7" , "MDA-MB-231" , "SK-BR-3" , "BT-20" , "MCF 10A" ] }, "dimension": { "name": "Fluorescence intensity" }, "molecularEntity": { "name": [ "Seliciclib" , "AT-7519" , "SCHEMBL1564574" , "AZD-8055" , "Sorafenib" , "CP466722" , "Alvocidib" , "GW843682X" , "Dasatinib" , "Tozasertib" , "Imatinib" , "TAE-684" , "CGP 60474" , "PD-173074" , "Crizotinib" , "BMS-345541" , "Saracatinib" , "Akt inhibitor viii" , "Tamatinib" , "BI-2536" , "A-443654" , "Pictilisib" , "CI-1040" , "PLX-4720" , "Lapatinib" , "Rapamycin" , "ZSTK 474" , "BX 912" , "Selumetinib" , "MK-2206" , "AZD-6482" , "NU-7441" , "OSI-027" , "WYE 125132" , "AZD-1152-HQPA" , "Vemurafenib" , "Enzastaurin" , "Palbociclib" , "PF-562271" , "PHA-793887" , "TORIN1" , "TORIN-2" , "LRRK2-IN-1" , "Erlotinib" , "Gefitinib" , "Nilotinib" , "PD-0325901" , "YM 201636" , "TWS 119" , "PF477736" , "LDN 193189" , "PF431396" , "Celastrol" , "Canertinib" , "PI-103" , "Dovitinib" , "C21H27N7O3" , "BMS-387032" , "GSK-1904529A" , "Linsitinib" , "Ruxolitinib" , "Momelotinib" , "Fedratinib" , "Trametinib" , "EX-8678" , "Buparlisib" , "SCHEMBL570779" , "Y-39983" , "Nintedanib" , "Foretinib" , "AZD-5438" , "Pelitinib" , "Nvp-auy922" , "AZD-8330" , "TGX 221" , "GSK1059615" , "C19H19FN4O3" , "CHIR-99021" , "Linifanib" , "PIK-93" , "Mitoxantrone" , "Dactolisib" , "Alpelisib" , "GDC-0980" , "SCHEMBL3958507" , "SCHEMBL17857056" , "MLS002232309" , "SCHEMBL6874948" , "SCHEMBL17052537" , "WZ3105" , "SCHEMBL3954849" , "QL47" , "Withaferin a" , "CHEMBL585951" , "SB590885" , "CP-724714" , "Neratinib" , "GSK-3 INHIBITOR IX" , "Geldanamycin" , "C28H30CIN5O4S" , "PHA-665752" , "Afatinib" , "HG6-64-1" , "SCHEMBL16065773" , "Monorden" , "WH-4-025" , "NVP-AEW541" ] }, "internal": { "projectName": "LINCS phase 2" }, "person": { "name": [ "Peter K. Sorger" , "Marc Hafner" , "Mario Niepel" ] }, "assay": { "name": [ "Fluorescence imaging cell count assay" ] }, "dataItem": { "dataTypes": [ "dataset" , "datasetDistributions" , "dataRepository" , "access" , "organization" , "biologicalProcess" , "cellLine" , "dimension" , "molecularEntity" , "internal" , "person" , "assay" ] }, "provenance": { "ingestMethod": "WEB", "ingestTarget": "http://lincsportal.ccs.miami.edu/dcic/api/fetchdata?searchTerm=*&limit=500", "filePattern": "", "ingestTime": "20161025T214923+0000" }, "NLP_Fields": { "gene": [ "small molecule kinase" ], "GeneID": [ ], "BP": [ "growth" ], "GOID": [ "GO:0040007" ], "Chemical": [ ], "ChemicalID": [ ], "Disease": [ "breast cancer" ], "DiseaseID": [ "C0006142" ], "Meshterm": [ "Joints" , "Statistical sensitivity" , "Cultured Cell Line" , "Libraries" , "Unmarried" , "Pharmaceutical Preparations" , "Therapeutic procedure" , "Data Set" , "Cell Count" ], "MeshID": [ "C0022417" , "C0036667" , "C0007600" , "C0023621" , "C0087136" , "C0013227" , "C0087111" , "C0150098" , "C0007584" ], "CellLine": [ ] } } } ] } }]