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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
MIT License
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upgrade arb-bio to version 7 #49725

Open KasperSkytte opened 1 month ago

KasperSkytte commented 1 month ago

I hereby request an upgrade of arb-bio from version 6.0 to version 7.0, which has now existed for a few years. For example for Ubuntu, there is only native support until Ubuntu20, Ubuntu22 is no longer compatible. Request also posted here https://github.com/epruesse/ARB/issues/2

KasperSkytte commented 1 month ago

assign @epruesse

KasperSkytte commented 1 month ago

I've made a working, but rather naive, apptainer container, which we have been using for a while as an alternative, definition here https://github.com/cmc-aau/biocloud-software/tree/main/containers/apptainer/arb, but maybe it needs some tweaking too. It simply runs the install script in a base ubuntu 20 image

KasperSkytte commented 1 month ago

update: I have started on the matter myself on this fork. I have finally solved the dependency tree manually, but am experiencing other issues when building and testing locally, issue here.