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biocore-ntnu / epic2

Ultraperformant reimplementation of SICER
https://doi.org/10.1093/bioinformatics/btz232
MIT License
56 stars 9 forks source link

Linux install error #27

Closed radio1988 closed 5 years ago

radio1988 commented 5 years ago

My installation command history

1. install anaconda
2. conda create -y -n py35 python=3.5 anaconda
3. conda activate py35
4. conda install epic2
5. conda install -c bioconda epic2

Error message: 

Traceback (most recent call last):
  File "/home/rl44w/anaconda3/envs/py35/bin/epic2", line 10, in <module>
    from epic2.src.reads_to_bins import files_to_bin_counts
  File "epic2/src/reads_to_bins.pyx", line 14, in init epic2.src.reads_to_bins
  File "libchtslib.pxd", line 2590, in init epic2.src.read_bam
ValueError: pysam.libchtslib.HTSFile size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject

I'm working in centOS

radio1988 commented 5 years ago

after creating a brand new py36 environment with the following command and install epic2, the problem was solved

conda create -y -n py36 python=3.6 anaconda
conda activate py36
conda install -c bioconda epic2
endrebak commented 5 years ago

Thanks! I was about to comment that it seems that the htslib header was different from when epic2 was installed. But I am not a C-wiz.