sufyazi
commented
5 years ago When I ran conda install -c conda-forge cxx-compiler before running pip install epic2 as suggested by endrebak in issue #26 I got this following error instead. Seems to be slightly different that the previous output and error.
Failed building wheel for epic2
Running setup.py clean for epic2
Failed to build epic2
Installing collected packages: epic2
Running setup.py install for epic2 ... error
Complete output from command /anaconda2/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-record-gHYpFo/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-2.7
creating build/lib.macosx-10.9-x86_64-2.7/epic2
copying epic2/version.py -> build/lib.macosx-10.9-x86_64-2.7/epic2
copying epic2/bigwig.py -> build/lib.macosx-10.9-x86_64-2.7/epic2
copying epic2/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/epic2
copying epic2/main.py -> build/lib.macosx-10.9-x86_64-2.7/epic2
creating build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
creating build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nanPar1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sorAra2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn6_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/saiBol1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn5_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor5_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer7_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ponAbe2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer10_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/micMur2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/anoCar2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/braFlo1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce10_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/myoLuc2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cavPor3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom4_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm6_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nanPar1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn4_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/echTel2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm10_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aplCal1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer6_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm9_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/speTri2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer6_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn6_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aquChr2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce10_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer10_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ailMel1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce11_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/macEug2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gasAcu1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer7_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nasLar1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg38_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/saiBol1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer4_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/myoLuc2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/galVar1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac8_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gasAcu1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cavPor3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor4_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce11_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryLat2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chrPic1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac8_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor5_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg18_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ochPri3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer5_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryCun2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/triMan1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chlSab2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/galVar1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro7_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rhiRox1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tarSyr2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg19_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce11_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chrPic1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryLat2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sorAra2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor5_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg18_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/triMan1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer5_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer5_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/macEug2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryCun2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/braFlo1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/triMan1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ailMel1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal5_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn5_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/macEug2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg19_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm10_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nasLar1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg38_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/saiBol1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/priPac1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor4_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cavPor3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/balAcu1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chlSab2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cerSim1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/geoFor1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/myoLuc2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom4_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro7_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm6_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn4_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aplCal1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm9_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/speTri2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal5_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryLat2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nanPar1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom5_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/echTel2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tarSyr2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn5_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm6_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg18_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ponAbe2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oreNil2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aquChr2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer10_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ponAbe2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer7_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm9_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/micMur2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer4_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rhiRox1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer10_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer7_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oreNil2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn5_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tarSyr2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom5_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer6_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal5_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryCun2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aplCal1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/echTel2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn4_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/myoLuc2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cerSim1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nasLar1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/geoFor1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chrPic1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/balAcu1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/anoCar2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cavPor3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor4_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/priPac1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gasAcu1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/galVar1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer4_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/saiBol1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg38_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nasLar1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg19_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm10_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/macEug2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ailMel1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce10_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aquChr2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn6_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/triMan1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/braFlo1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer5_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ochPri3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sorAra2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac8_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chrPic1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce11_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro7_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rhiRox1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chlSab2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/braFlo1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryCun2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ornAna1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ochPri3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg18_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/balAcu1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac8_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor5_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg38_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sorAra2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oryLat2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rhiRox1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro7_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cerSim1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aplCal1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/chlSab2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gorGor4_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/priPac1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/gasAcu1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/priPac1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/speTri2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/galVar1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer4_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/xenTro3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm10_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hg19_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/geoFor1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom5_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ailMel1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/petMar2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/aquChr2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ce10_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn6_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/micMur2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/anoCar2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer6_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm3_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tetNig2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/taeGut2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal5_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/equCab1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/speTri2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/mm9_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/hetGla1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/echTel2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rn4_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/danRer3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/dm6_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/sacCer1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom4_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom4_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/geoFor1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/cerSim1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oviAri1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/balAcu1_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/anoCar2_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/micMur2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/calJac1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ponAbe2_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/susScr3_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oreNil2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/eriEur2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nomLeu1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/ochPri3_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/rheMac3_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/fr2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/oreNil2_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/tarSyr2_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/monDom5_36.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/melGal1_50.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/nanPar1_75.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
copying epic2/effective_sizes/strPur1_100.txt -> build/lib.macosx-10.9-x86_64-2.7/epic2/effective_sizes
creating build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/saiBol1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/aplCal1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/tetNig2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ornAna1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ailMel1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/susScr3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/geoFor1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/nomLeu2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ponAbe2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/oryCun2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/calJac1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/aquChr2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/sacCer3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/petMar1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/sorAra2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/equCab1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/hetGla2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer7.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/nasLar1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rhiRox1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/micMur2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/hg18.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/balAcu1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/fr1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rn4.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/mm9.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/priPac1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/triMan1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/gorGor5.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/taeGut1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/cavPor3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/eriEur2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/calJac3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/sacCer1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer5.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ce10.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rheMac3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/melGal5.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/monDom4.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/strPur2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rn6.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/xenTro3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/strPur1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/loxAfr3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/gorGor3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/mm10.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer6.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/braFlo1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/hg19.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/galVar1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/anoCar2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rn5.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/myoLuc2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/dm3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ochPri3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/susScr2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/dm6.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rheMac8.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/nomLeu3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/oreNil2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/chlSab2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/sacCer2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/eriEur1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/oviAri3.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/nanPar1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/taeGut2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ce11.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/rheMac2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/cerSim1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/chrPic1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer4.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/equCab2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/hetGla1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/speTri2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/monDom5.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/fr2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/macEug2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/echTel2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/apiMel1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/nomLeu1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/tarSyr2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/oryLat2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/xenTro7.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/tetNig1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/ornAna2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/oviAri1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/gasAcu1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/petMar2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/hg38.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/gorGor4.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/melGal1.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/papAnu2.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
copying epic2/chromsizes/danRer10.chromsizes -> build/lib.macosx-10.9-x86_64-2.7/epic2/chromsizes
creating build/lib.macosx-10.9-x86_64-2.7/epic2/examples
copying epic2/examples/control.bed.gz -> build/lib.macosx-10.9-x86_64-2.7/epic2/examples
copying epic2/examples/test.bed.gz -> build/lib.macosx-10.9-x86_64-2.7/epic2/examples
copying epic2/src/find_islands.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/SICER_stats2.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/read_bam.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/genome_info.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/statistics.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/SICER_stats.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/reads_to_bins.pyx -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/cpp_read_files.pxd -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
copying epic2/src/gzstream.h -> build/lib.macosx-10.9-x86_64-2.7/epic2/src
running build_ext
building 'epic2.src.reads_to_bins' extension
creating build/temp.macosx-10.9-x86_64-2.7
creating build/temp.macosx-10.9-x86_64-2.7/epic2
creating build/temp.macosx-10.9-x86_64-2.7/epic2/src
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda2/include -I/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2/epic2/src -I/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2 -I. -I/anaconda2/include/python2.7 -c epic2/src/reads_to_bins.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/reads_to_bins.o -Ofast -Wall -std=c++11
epic2/src/reads_to_bins.cpp:2903:32: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare]
__pyx_t_11 = ((__pyx_v_i >= 0) != 0);
~~~~~~~~~ ^ ~
1 warning generated.
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda2/include -I/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2/epic2/src -I/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2 -I. -I/anaconda2/include/python2.7 -c epic2/src/gzstream.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/gzstream.o -Ofast -Wall -std=c++11
x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-rpath,/anaconda2/lib -L/anaconda2/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-2.7/epic2/src/reads_to_bins.o build/temp.macosx-10.9-x86_64-2.7/epic2/src/gzstream.o -L/anaconda2/lib -L/anaconda2/lib -lz -o build/lib.macosx-10.9-x86_64-2.7/epic2/src/reads_to_bins.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
building 'epic2.src.SICER_stats' extension
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I. -I/anaconda2/include/python2.7 -c epic2/src/SICER_stats.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats.o -Ofast -Wall -std=c++11
x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-rpath,/anaconda2/lib -L/anaconda2/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats.o -L/anaconda2/lib -o build/lib.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
building 'epic2.src.SICER_stats2' extension
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I. -I/anaconda2/include/python2.7 -c epic2/src/SICER_stats2.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats2.o -Ofast -Wall -std=c++11
x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-rpath,/anaconda2/lib -L/anaconda2/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats2.o -L/anaconda2/lib -o build/lib.macosx-10.9-x86_64-2.7/epic2/src/SICER_stats2.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
building 'epic2.src.statistics' extension
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I. -I/anaconda2/include/python2.7 -c epic2/src/statistics.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/statistics.o -Ofast -Wall -std=c++11
x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-rpath,/anaconda2/lib -L/anaconda2/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-2.7/epic2/src/statistics.o -L/anaconda2/lib -o build/lib.macosx-10.9-x86_64-2.7/epic2/src/statistics.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
building 'epic2.src.find_islands' extension
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I. -I/anaconda2/include/python2.7 -c epic2/src/find_islands.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/find_islands.o -Ofast -Wall -std=c++11
x86_64-apple-darwin13.4.0-clang++ -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-rpath,/anaconda2/lib -L/anaconda2/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-2.7/epic2/src/find_islands.o -L/anaconda2/lib -o build/lib.macosx-10.9-x86_64-2.7/epic2/src/find_islands.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x2D 0x76 0x33 ) which is not the architecture being linked (x86_64): /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/lib/libSystem.tbd
building 'epic2.src.read_bam' extension
x86_64-apple-darwin13.4.0-clang -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda2/lib/python2.7/site-packages/pysam -I/anaconda2/lib/python2.7/site-packages/pysam/include/htslib -I/anaconda2/lib/python2.7/site-packages/pysam/include/samtools -I/anaconda2/include -I. -I/anaconda2/include/python2.7 -c epic2/src/read_bam.cpp -o build/temp.macosx-10.9-x86_64-2.7/epic2/src/read_bam.o -Ofast -Wall -std=c++11
In file included from epic2/src/read_bam.cpp:670:
/anaconda2/bin/../include/c++/v1/algorithm:4091:5: error: no matching function for call to '__sort'
__sort<_Comp_ref>(__first, __last, __comp);
^~~~~~~~~~~~~~~~~
epic2/src/read_bam.cpp:3298:12: note: in instantiation of function template specialization 'std::__1::sort<std::__1::__wrap_iter<__pyx_t_5epic2_3src_8read_bam_interval *>, unsigned int (__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)>' requested here
std::sort<std::vector<__pyx_t_5epic2_3src_8read_bam_interval> ::iterator,uint32_t (__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)>(__pyx_v_intervals.begin(), __pyx_v_intervals.end(), __pyx_f_5epic2_3src_8read_bam_compare_start_end);
^
/anaconda2/bin/../include/c++/v1/algorithm:3888:1: note: candidate function not viable: no known conversion from 'unsigned int (*)(__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)' to 'unsigned int (&)(__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)' for 3rd argument; dereference the argument with *
__sort(_RandomAccessIterator __first, _RandomAccessIterator __last, _Compare __comp)
^
/anaconda2/bin/../include/c++/v1/algorithm:2171:15: error: no matching function for call to 'adjacent_find'
__first = _VSTD::adjacent_find<_ForwardIterator, typename add_lvalue_reference<_BinaryPredicate>::type>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/anaconda2/bin/../include/c++/v1/__config:390:15: note: expanded from macro '_VSTD'
#define _VSTD std::_LIBCPP_NAMESPACE
^
epic2/src/read_bam.cpp:3307:43: note: in instantiation of function template specialization 'std::__1::unique<std::__1::__wrap_iter<__pyx_t_5epic2_3src_8read_bam_interval *>, unsigned int (__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)>' requested here
(void)(__pyx_v_intervals.erase(std::unique<std::vector<__pyx_t_5epic2_3src_8read_bam_interval> ::iterator,uint32_t (__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)>(__pyx_v_intervals.begin(), __pyx_v_intervals.end(), __pyx_f_5epic2_3src_8read_bam_start_end_equal), __pyx_v_intervals.end()));
^
/anaconda2/bin/../include/c++/v1/algorithm:1109:1: note: candidate function not viable: no known conversion from 'unsigned int (*)(__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)' to 'unsigned int (&)(__pyx_t_5epic2_3src_8read_bam_interval, __pyx_t_5epic2_3src_8read_bam_interval)' for 3rd argument; dereference the argument with *
adjacent_find(_ForwardIterator __first, _ForwardIterator __last, _BinaryPredicate __pred)
^
/anaconda2/bin/../include/c++/v1/algorithm:1127:1: note: candidate function template not viable: requires 2 arguments, but 3 were provided
adjacent_find(_ForwardIterator __first, _ForwardIterator __last)
^
2 errors generated.
error: command 'x86_64-apple-darwin13.4.0-clang' failed with exit status 1
----------------------------------------
Command "/anaconda2/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-record-gHYpFo/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/w_/hpfb1phn2bgdwgqmqv9g05vh0000gn/T/pip-install-lj69mf/epic2/
endrebak
Hello,
I have been having problems with pip install epic2 not succeeding.
Here's the long error code.
I have tried reinstalling gcc but to no avail. Not sure how to proceed from here. Would really love to try out epic2 as I have tried out SICER and it does what I want to do brilliantly, but SICER runs horribly long on my computer (while macs2 is almost instantaneous, but macs2 doesn't really do well for my current experiment). Any help is very appreciated. I read that there's some header problem anticipated by the devs, but I am not sure what that means, honestly.