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biocore / Evident-initial-demo

Elucidating sampling effort for microbial analysis studies
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Misc updates for the newest VM #38

Closed ElDeveloper closed 11 years ago

ElDeveloper commented 11 years ago

BIOM is now forced to use SparseMat as a backend using a new configuration file.

To test and make sure that it is working for you, you can call the following lines in www/handler.psp:

import logging
from biom.util import load_biom_config
logging.debug('BIOM %s' % load_biom_config()['python_code_sparse_backend'])

Once this pull request is merged, I'll update the virtual machine.