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biocore / emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets
http://biocore.github.io/emperor/
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Clicking on index.html file leads to WebGL error #422

Closed davis164 closed 9 years ago

davis164 commented 9 years ago

Hi,

I have a variety of PCoA plots as part of my QIIME output. However, if I right click the index.html files and tell them to open with Chrome, I get an error saying that Web GL is disabled. However, Web GL is in fact enabled. I cannot see the plots. Also, if I do a webgl check at https://get.webgl.org/, it tells me that Web GL is supported. What could be the problem and how can I get my index.html files from QIIME to show up?

Thanks!

antgonza commented 9 years ago

Which version of emperor are you using?

davis164 commented 9 years ago

How do I find that out? Do I need to install it on my own before I can view my QIIME files?

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 8, 2015 12:09:44 PM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Which version of emperor are you using?

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antgonza commented 9 years ago

Emperor gets installed with QIIME. You can check the version by running: make_emperor.py --version

davis164 commented 9 years ago

Sorry for the delay. The version is 0.9.51

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 8, 2015 12:28:03 PM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Emperor gets installed with QIIME. You can check the version by running: make_emperor.py --version

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antgonza commented 9 years ago

Strange. That's the latests version of Emperor and should be fine. However, other option is that you generated those plots with an older version. Could you do head index.html on your file? There you should find the version of Emperor used to generate that plot. If it's the latest could you share your files so we can take a look?

davis164 commented 9 years ago

Yes it is listed as the latest version. Attached is my index.html file for a weighted unifrac plot. Let me know if you need anything else

Thanks!

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 10:26:02 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Strange. That's the latests version of Emperor and should be fine. However, other option is that you generated those plots with an older version. Could you do head index.html on your file? There you should find the version of Emperor used to generate that plot. If it's the latest could you share your files so we can take a look?

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antgonza commented 9 years ago

You can't attach files to github, either send me an email or add it to dropbox and send us the link. It will be better if you send us the full folder. Thanks.

davis164 commented 9 years ago

what is the email address I can send to?

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 10:34:35 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

You can't attach files to github, either send me an email or add it to dropbox and send us the link. It will be better if you send us the full folder. Thanks.

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antgonza commented 9 years ago

antgonza@gmail.com

davis164 commented 9 years ago

I cannot upload the whole folder. How can I dropbox it to you?

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 10:39:52 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

antgonza@gmail.com

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antgonza commented 9 years ago

Yup.

davis164 commented 9 years ago

I'm sorry, I wasn't clear. I know I can dropbox it, but I don't know how as I am not very familiar with Dropbox. Is there a link somewhere that will get it directly to you?

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 11:01:46 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Yup.

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antgonza commented 9 years ago

Right click on the zipped file and you should have an option to share the dropbox link, this will copy it, then you can paste it.

davis164 commented 9 years ago

https://www.dropbox.com/sh/oo4z39e0fe69v1t/AAC1sjWJthOoJi8cTD1Sumwsa?dl=0

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 11:14:59 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Right click on the zipped file and you should have an option to share the dropbox link, this will copy it, then you can paste it.

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antgonza commented 9 years ago

I can open that file without issues in Chrome, could you check that you have the latests version of Chrome? Version 45.0.2454.85 (64-bit)

davis164 commented 9 years ago

how do I do that?

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 11:24:04 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

I can open that file without issues in Chrome, could you check that you have the latests version of Chrome? Version 45.0.2454.85 (64-bit)

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antgonza commented 9 years ago

https://support.google.com/chrome/answer/95414?hl=en

davis164 commented 9 years ago

Chrome Version 45.0.2454.85 m

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 11:29:35 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

https://support.google.com/chrome/answer/95414?hl=en

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antgonza commented 9 years ago

Can you see the plots now? If not, could you tell us the OS, make and model of your machine ... it's weird cause it actually opens for me.

davis164 commented 9 years ago

nope still nothing. Dell Optiplex 7010 running Windows 7 Enterprise 64 bit operating system Intel(R) Core i7-3770 CPU @ 3.40GHz

Ariangela J. Kozik Ph.D Student Interdisciplinary Life Science Purdue University

----- Original Message ----- From: "Antonio Gonzalez" notifications@github.com To: "biocore/emperor" emperor@noreply.github.com Cc: "davis164" davis164@purdue.edu Sent: Tuesday, September 15, 2015 11:50:40 AM Subject: Re: [emperor] Clicking on index.html file leads to WebGL error (#422)

Can you see the plots now? If not, could you tell us the OS, make and model of your machine ... it's weird cause it actually opens for me.

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antgonza commented 9 years ago

Sorry for the slow reply. It's hard to debug without a Windows machine. Anyway, the issue is that the newest official Windows Chrome doesn't behave as expected. However, https://www.google.com/chrome/browser/canary.html does.

meiruv commented 9 years ago

Hi there I've been having the same issue, I'm using the same version of qiime and emperor as davis164 does and can't install the canary chrome because I'm working on linux. do you have any idea for me too? thanks in advance, Meirav :)

ElDeveloper commented 9 years ago

@meiruv, can you access the plots shown here:

http://emperor.microbio.me/master/make_emperor/biplot/index.html http://emperor.microbio.me/master/make_emperor/jackknifed_pcoa/index.html http://emperor.microbio.me/master/make_emperor/vectors/index.html

meiruv commented 9 years ago

sorry for the late reply , I haven't been to work until today.

I can access your plots.

ElDeveloper commented 9 years ago

If you can access and view those plots, then the problem might be either: (1) you haven't yet extracted the full list of files into your computer i.e. all the contents of emperor_required_resources and index.html or (2) you are trying to open index.html without the emperor_required_resources folder.

meiruv commented 9 years ago

indeed I lacked the emperor_required_resources, now it works.

thank you very much!

ElDeveloper commented 9 years ago

Great, thanks for confirming this!