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biocore
/
micronota
annotation pipeline for microbial genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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Some Questions about q2-fragment-insertion
#84
cafferychen777
opened
1 year ago
0
refactor xml parser to reduce memory footprint
#83
RNAer
opened
6 years ago
1
ENH: antimicrobial and virulence genes identification
#82
tkosciol
opened
6 years ago
0
update README and add conda build recipe
#81
RNAer
closed
6 years ago
2
update with snakemake
#80
RNAer
closed
6 years ago
3
use snakemake and IntervalMetadata
#79
RNAer
closed
7 years ago
6
use snakemake and IntervalMetadata
#78
RNAer
closed
7 years ago
5
Updating parsers
#77
mortonjt
opened
7 years ago
0
Transport proteins
#76
mortonjt
opened
8 years ago
0
migrate from burrito to dumpling
#75
RNAer
closed
8 years ago
7
Parser cmscan
#74
sjanssen2
closed
8 years ago
4
Failed building wheel for scipy
#73
sjanssen2
closed
8 years ago
2
use sam parser for diamond output
#72
RNAer
closed
8 years ago
2
Cache fix
#71
mortonjt
closed
8 years ago
5
GFF format parser and tests
#70
tkosciol
opened
8 years ago
10
Add option to create database of functional assignments
#69
elsherbini
opened
8 years ago
1
FIX: sam parser empty case
#68
mortonjt
closed
8 years ago
2
get aligned length from diamond SAM output
#67
RNAer
opened
8 years ago
1
misc changes
#66
RNAer
closed
8 years ago
3
SAM parser sniffer warning
#65
RNAer
opened
8 years ago
2
Cache
#64
mortonjt
closed
8 years ago
4
Store CIGAR strings from Diamond alignment
#63
mortonjt
opened
8 years ago
0
ENH: Skeleton code for Config file
#62
souravsingh
closed
7 years ago
2
signalP integration
#61
tkosciol
opened
8 years ago
6
FIX: Fixed parsing sam output
#60
mortonjt
closed
8 years ago
0
WIP : Cache
#59
mortonjt
closed
8 years ago
0
ENH: Adding in sam parsers
#58
mortonjt
closed
8 years ago
0
Abstracting out File IO
#57
mortonjt
opened
8 years ago
0
SAM parser
#56
mortonjt
closed
8 years ago
4
time benchmark
#55
RNAer
opened
8 years ago
0
configuration and logging
#54
RNAer
closed
8 years ago
8
IO parsers for GFF
#53
tkosciol
opened
8 years ago
3
SAM/BAM parsers
#52
mortonjt
closed
8 years ago
1
MinCED wrapper
#51
tkosciol
closed
8 years ago
6
add dry run option
#50
RNAer
opened
8 years ago
0
set checkpoint
#49
RNAer
opened
8 years ago
0
refactoring the functions in each bfillings
#48
RNAer
closed
6 years ago
0
add logging to log running info
#47
RNAer
opened
8 years ago
0
WIP: final pr before alpha release
#46
RNAer
closed
8 years ago
1
Configuration file
#45
mortonjt
opened
8 years ago
2
fine touch on tigrfam and uniref
#44
RNAer
closed
8 years ago
2
WIP: big change
#43
RNAer
closed
8 years ago
4
Add config parser
#42
RNAer
closed
8 years ago
1
WIP: New Sequence data structure
#41
mortonjt
closed
8 years ago
0
database framework and tigrfam
#40
RNAer
closed
8 years ago
12
databases for functional assignment
#39
RNAer
opened
8 years ago
1
gene calling tools
#38
RNAer
opened
8 years ago
0
Update Makefile and other files accordingly
#37
RNAer
closed
8 years ago
7
Minor fix for sphinx setup
#36
RNAer
closed
8 years ago
0
Revert "setup sphinx doc"
#35
mortonjt
closed
8 years ago
0
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