bioinfo-pf-curie / TMB

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Is the VEP annotated vcf supported? #8

Closed gudeqing closed 7 months ago

gudeqing commented 2 years ago

Hi, Is the VEP annotated vcf supported? Best regards!

nservant commented 2 years ago

Hi, Not yet, but you should be able to do it by yourself, by setting up your own config file for VEP. See the files in config/annovar.yml for exemple. The only thing you have to do is defined the different categories; coding, non coding, etc. If you do it, I'll be happy to include it in the repo ;) Thanks