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bioinfo-ut / PlasmidSeeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
BSD 3-Clause "New" or "Revised" License
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Can't exec "GenomeTester4/glistmaker": #5

Closed SK-N-BE closed 6 years ago

SK-N-BE commented 6 years ago

Hei, I was using plasmidseeker for a while. Everything was working fine. However, now I got a new computer and I had to reinstall it; and suddenly I get these error messages:

Keine Berechtigung means "no right/no authority)

Loading database... Converting sample reads to k-mers... Can't exec "GenomeTester4/glistmaker": Keine Berechtigung at plasmidseeker.pl line 256. Can't exec "GenomeTester4/glistcompare": Keine Berechtigung at plasmidseeker.pl line 258. Finding coverage of bacterial isolate... Can't exec "GenomeTester4/glistmaker": Keine Berechtigung at plasmidseeker.pl line 264. Can't exec "GenomeTester4/glistcompare": Keine Berechtigung at plasmidseeker.pl line 137. Can't exec "GenomeTester4/glistcompare": Keine Berechtigung at plasmidseeker.pl line 138. Can't exec "GenomeTester4/gdistribution": Keine Berechtigung at plasmidseeker.pl line 139. Printing distribution of tmp_bacteria.txt Initial median 0 Can't exec "GenomeTester4/glistcompare": Keine Berechtigung at plasmidseeker.pl line 144. Can't exec "GenomeTester4/glistcompare": Keine Berechtigung at plasmidseeker.pl line 145. Can't exec "GenomeTester4/gdistribution": Keine Berechtigung at plasmidseeker.pl line 146. FINAL median 0 Bacteria median coverage is 0 Bacteria median coverage is too low (less than 3). Higher coverage dataset is needed or use flag --ponly at plasmidseeker.pl line 268.

The coverage is not 0 - I have run the sample before.

SK-N-BE commented 6 years ago

Hei, I found out what to do: There was no permission to execute the GenomeTester4 files and I used this command to resolve this:

chmod 777 /home/xxx/Softwares/plasmidseeker/GenomeTester4/glistmaker