search

bioinfologics / satsuma2

FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
41 stars 13 forks source link

Satsuma2 dies with: terminate called after throwing an instance of 'std::length_error' #23

Open fredlecerf opened 4 years ago

fredlecerf commented 4 years ago

Hi,

Using the last version of Satsuma2, compiled with gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) on a machine with 128 Gb RAM, I've got the following issue :

atsumaSynteny2 -q ${refpath}Gallus_gallus.Gallus_gallus-5.0.dna.toplevel.fa -t ${refpath}Homo_sapiens.GRCh38.dna.toplevel.fa -o ouptputGGA-HSA

SATSUMA: Welcome to SatsumaSynteny! Current date and time: 2019/11/21 10:04:02
Path for Satsuma2: '/usr/local/bin'
Executing SatsumaSynteny2
Setting up grid.
Preparing...
select=0    chunks=20556050
chunks: 20556050
select=0    chunks=312141
chunks: 312141
terminate called after throwing an instance of 'std::length_error'
  what():  vector::_M_fill_insert
Abandon

(comparing HSA and GGA full genome)

thx in advance

wuxingbo1986 commented 3 years ago

Hi, I have the same issue, did you get a solution? thanks.